PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G011381.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 352aa    MW: 37482.5 Da    PI: 8.6426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G011381.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.1e-11285330655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  HL.SW.v1.0.G011381.1 285 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 330
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-15282344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-10283334No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13284342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-8285330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-13285335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MYNSNSSSSS QKPTGQPPTG LTRYGSAPGS LLATAVDSVI GAEREFNTLR SPLGGHYFSG  60
DSSSITSDSS CKVNSSLHRS HGLNEIAARI GSSSSSSSSS ASASVSASPS SSLVRQRSSP  120
AGFFSHLGNV VTDKNGFSVT RGTGGYGSQG GTNCGPGVSR LKSQLSFTRQ DCLSQISEVS  180
ENVIDGMSSE NGHHNASHSF ATSFGMDSWD NNTNSIVFSA PQSKRAKNMD GDLYNCLNVL  240
DTQFQFSLPQ TTLEMAAVEK LLHIPEDSVP CKIRAKRGCA THPRSIAERE RRTRISGKLK  300
KLQDLVPNMD KQTSYADMLD LAVQHIKGLQ NQVKKLHTEL ENCTCGCKQN T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887123.11e-180transcription factor bHLH128 isoform X3
SwissprotQ8H1023e-98BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A2P5FCM90.0A0A2P5FCM9_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_008380690.11e-164(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]