PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G010668.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 135aa MW: 16019.2 Da PI: 10.0105 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.2 | 1.9e-20 | 55 | 107 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le Fe+++++ e++ +LA++lgL+ rqV vWFqNrRa++k HL.SW.v1.0.G010668.1 55 KRKLSEEQVNLLEMNFESEHKLESERKDRLASELGLDPRQVAVWFQNRRARWK 107 4589************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 118.1 | 4.9e-38 | 54 | 135 | 2 | 83 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +kr+ls+eqv+lLE++Fe+e+kLe+erK +la+eLgl+prqvavWFqnrRAR+ktk+lE++y++Lk+ +d+++++++rLe+e HL.SW.v1.0.G010668.1 54 RKRKLSEEQVNLLEMNFESEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKTKKLEEEYSSLKKLHDSVVHDKCRLESE 135 8******************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.086 | 49 | 109 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-17 | 52 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.56E-15 | 54 | 110 | No hit | No description |
SuperFamily | SSF46689 | 2.17E-18 | 55 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.3E-17 | 55 | 107 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 56 | 116 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.0E-6 | 80 | 89 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 84 | 107 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.0E-6 | 89 | 105 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MTSTMNNQVE DHMVLYTQLY PGVYPQMAPQ QGETKAKRRR KKNKSAKEES ALARKRKLSE 60 EQVNLLEMNF ESEHKLESER KDRLASELGL DPRQVAVWFQ NRRARWKTKK LEEEYSSLKK 120 LHDSVVHDKC RLESE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 55 | RRRKKNKSAKEESALARKR |
2 | 39 | 56 | RKKNKSAKEESALARKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010099829.1 | 9e-66 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 2e-54 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A2P5BC59 | 6e-70 | A0A2P5BC59_PARAD; Octamer-binding transcription factor | ||||
STRING | XP_010099829.1 | 3e-65 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 6e-41 | homeobox protein 40 |
Publications ? help Back to Top | |||
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