PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G010408.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HRT-like

Protein Properties

Length: 402aa MW: 44739.1 Da PI: 10.1579

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G010408.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	53.8	3.1e-17	272	302	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l++ s+C+r+Pv+gRKRC+ HKGmRi HL.SW.v1.0.G010408.1 272 ICGVVLGHDSICRRPPVEGRKRCADHKGMRI 302 8*****************************7 PP
2	HRT-like	54.5	2e-17	350	380	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CG+il dGs+C+ qP+kg+KRC eHKG+Ri HL.SW.v1.0.G010408.1 350 TCGFILVDGSPCRSQPIKGNKRCVEHKGKRI 380 7*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MVAGEPGAVV PRLKREDCKH TKHDRQFSRW EILVGPSDWE DYSLGKEGAE RYRVHNLPKD 60 SGPGVYELGI AVSRTGLGRE IGKLVPERIV VVYLGQADSV RTRLQRYGRS GAHLGNSYSS 120 GIPTDSKAAL QKGPGLFEEI LLSGYPIVFR WAPMPSKSDA IRTETKLLNT FDYAWNTSIN 180 GSRRPNDIIQ KLKKISLSTT CFYDGVLRLV PFSQKQVGIR IEARKLPSTE NKFSSHVEDE 240 NHNLLSRVFK FGRSQPRLVL DRSTITEDRT TICGVVLGHD SICRRPPVEG RKRCADHKGM 300 RIKGAVKVEI SNSNVHPQSD CAAPRSSHDD SKGLSQVTVN YLTSERFTPT CGFILVDGSP 360 CRSQPIKGNK RCVEHKGKRI HKPNSVPVQN GKIDYLQLVI S*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MVAGEPGAVV PRLKREDCKH TKHDRQFSRW EILVGPSDWE DYSLGKEGAE RYRVHNLPKD  60
SGPGVYELGI AVSRTGLGRE IGKLVPERIV VVYLGQADSV RTRLQRYGRS GAHLGNSYSS  120
GIPTDSKAAL QKGPGLFEEI LLSGYPIVFR WAPMPSKSDA IRTETKLLNT FDYAWNTSIN  180
GSRRPNDIIQ KLKKISLSTT CFYDGVLRLV PFSQKQVGIR IEARKLPSTE NKFSSHVEDE  240
NHNLLSRVFK FGRSQPRLVL DRSTITEDRT TICGVVLGHD SICRRPPVEG RKRCADHKGM  300
RIKGAVKVEI SNSNVHPQSD CAAPRSSHDD SKGLSQVTVN YLTSERFTPT CGFILVDGSP  360
CRSQPIKGNK RCVEHKGKRI HKPNSVPVQN GKIDYLQLVI S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024017156.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2 isoform X1
TrEMBL	W9R5X1	0.0	W9R5X1_9ROSA; Uncharacterized protein
STRING	XP_010090025.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	4e-87	effector of transcription2