PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G010405.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 617aa    MW: 70825.4 Da    PI: 6.7026
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G010405.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.51.2e-1102416131373
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lL++cA+avs +d+++a+++L++++e++sp+gd  qRla++f ++L arla+ + + ++  +p   +  + s+ l+a++l    +P
  HL.SW.v1.0.G010405.1 241 LRNLLISCAQAVSIDDTRAAHKVLKQIREHSSPSGDGSQRLAHFFGNGLDARLAGIGRGGSSVYSPLLGR-VKASDLLKAFHLNLCSCP 328
                           689****************************************************888887777776665.77899*******99**** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           + k++ l aN+ I++ +e+++++Hi+Df+i +G+QWp +++ L++ p+gpp+lRiTg++ p++g   ke++eetg+rLa+++e++gvpf
  HL.SW.v1.0.G010405.1 329 FRKMAMLFANKSIMQVAEKATTLHIVDFGILYGFQWPIFIERLSKMPGGPPNLRITGIEFPQNGfrPKERVEETGRRLAEYCERFGVPF 417
                           ***************************************************************9************************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           ++n++++k++e++++ee++++++E++aVn++++l+++ +esv+    r++vL+l+++++P ++v +  + ++n++ F++rf eal +ys
  HL.SW.v1.0.G010405.1 418 RYNAIATKNWESIRVEEIELESNEVVAVNCMMRLKHIIEESVENCP-RNAVLSLIRKMNPAIFVNSIVNGSYNAPFFVTRFREALFHYS 505
                           **************************************88888777.****************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           alfd+l+a+++re++ r+ +Ere++greivnv+aceg++r+er et+++W+ r ++ GF++ pl+++++ + k  lr+ + + + ++++
  HL.SW.v1.0.G010405.1 506 ALFDMLDATVGRENQVRVLYEREIFGREIVNVIACEGEKRVERPETYKQWHVRCSRTGFRSRPLDQDIMRKFKEKLRTWYHKDFVIDQD 594
                           ********************************************************************************888****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaW 373
                           s+++++gWk+r  ++ S+W
  HL.SW.v1.0.G010405.1 595 SNWMLQGWKGRIAYASSCW 613
                           ******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.843215594IPR005202Transcription factor GRAS
PfamPF035144.1E-108241613IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MDPSFTDYSD FTNSFIIQNH SINLFSLEEP SFPSTTVSPG EEEGDSNDEN EFSIYVLKLI  60
NQILMEENME EEETSMFNDP LGLQLTEKSF YDALGQSYPY STNQSLQNPE TNFPVSSSLQ  120
PFVPMDNNFQ FDLAMAQKIF RETDSISQFK RGFEEASKFL PKGDQLISPQ LKNHQNEEEE  180
EERSNKKSAH YIDESHLSEM FDRVLLQVDP RCGQCSEPSK VNGRKGRGKR QKKKKKEIVD  240
LRNLLISCAQ AVSIDDTRAA HKVLKQIREH SSPSGDGSQR LAHFFGNGLD ARLAGIGRGG  300
SSVYSPLLGR VKASDLLKAF HLNLCSCPFR KMAMLFANKS IMQVAEKATT LHIVDFGILY  360
GFQWPIFIER LSKMPGGPPN LRITGIEFPQ NGFRPKERVE ETGRRLAEYC ERFGVPFRYN  420
AIATKNWESI RVEEIELESN EVVAVNCMMR LKHIIEESVE NCPRNAVLSL IRKMNPAIFV  480
NSIVNGSYNA PFFVTRFREA LFHYSALFDM LDATVGRENQ VRVLYEREIF GREIVNVIAC  540
EGEKRVERPE TYKQWHVRCS RTGFRSRPLD QDIMRKFKEK LRTWYHKDFV IDQDSNWMLQ  600
GWKGRIAYAS SCWLPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-472456138374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228236KRQKKKKKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106506.20.0scarecrow-like protein 14
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A2P5D6690.0A0A2P5D669_TREOI; GRAS transcription factor
STRINGEMJ096380.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.11e-177GRAS family protein