PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G010396.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | GATA | ||||||||
Protein Properties | Length: 288aa MW: 32121 Da PI: 7.954 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.3 | 2.9e-20 | 155 | 189 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++ HL.SW.v1.0.G010396.1 155 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 189 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.89 | 149 | 185 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.8E-18 | 149 | 200 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.76E-13 | 152 | 190 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.7E-17 | 153 | 189 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.97E-13 | 154 | 186 | No hit | No description |
Pfam | PF00320 | 7.0E-18 | 155 | 189 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 155 | 180 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MMHRCSSSQG NMVGPCSCGL YHSQSNSFSV LFSMPNHKPY DHYDQSHQHQ HHDMYSFASP 60 SSSVDCTLSL GTPSTRLSTT EDYYDDNSNS SNNNNKHQRM RHSERRNDSC VSNFCWDLLQ 120 PNKQQTTSSH KNSGRSSSNS SNSAAANDPL LARRCANCDT TSTPLWRNGP RGPKSLCNAC 180 GIRFKKEERR AAATSTANGA TSGVVIEPSH MFSHHNNPWS NINHHHQYQH SQAQKMPCLS 240 PAAAMGNEFR FMDDENHEPA ADSNGISFLS WRLNVTDRPS LVHDFTR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009371601.1 | 1e-108 | PREDICTED: GATA transcription factor 18-like | ||||
TrEMBL | A0A2P5D336 | 1e-153 | A0A2P5D336_PARAD; GATA transcription factor | ||||
STRING | XP_009371601.1 | 1e-108 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4105 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50870.1 | 3e-51 | GATA family protein |