PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G010283.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | G2-like | ||||||||
Protein Properties | Length: 471aa MW: 52211.9 Da PI: 6.1714 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.5 | 1.1e-31 | 93 | 146 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ HL.SW.v1.0.G010283.1 93 PRLRWTPDLHLCFVRAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 146 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-30 | 89 | 147 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.085 | 89 | 149 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.94E-15 | 90 | 148 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.8E-23 | 93 | 148 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.6E-9 | 94 | 145 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MAERSSDDDD GSSQVSKTNK DYNIMEHINE DDDEGEEEDD DNEDDDDEKD DDDDDDDRKN 60 GRSSSNSTVE ESGSKKGATS GGSVRQYVRS KTPRLRWTPD LHLCFVRAVE RLGGQDRATP 120 KLVLQLMNIK GLSIAHVKSH LQMYRSKKTE DPNQVLSEQG FFLEAAGREH HHIYNLSQLP 180 MLQSFNQYWP NSSLIRSYGD SSSWRSGRDH QIYNSPRSSI RAALDSANRT SHGSVQGFNY 240 GSVAERLLLR NNNITNAASS AQMGTTTANS LLTNNVSSFN SASWRTRHHM QAHQNESFQR 300 SWRTQFGQTS SMEDHHSINN ILPKKFNEKG ADDDDDNHQG NTTLMKSSSS SIVGSSHHQL 360 SKQEGQRNVL KRKALDSQNG DDLDLDLSLK LTPNTKVKIG GGLEKGLVIG NNEEVEENST 420 SLSLSLSPSS PSKLTRLNIG GVRSSNGIIM NRKINNNGRL MAASTLDLTL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-18 | 94 | 148 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-18 | 94 | 148 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-18 | 94 | 148 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-18 | 94 | 148 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015877428.1 | 3e-87 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A2P5BAD6 | 1e-150 | A0A2P5BAD6_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010105426.1 | 1e-103 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2378 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 4e-47 | G2-like family protein |