PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G010120.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Nin-like

Protein Properties

Length: 649aa MW: 71502 Da PI: 6.5719

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G010120.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.1	1.7e-28	329	379	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++isl +l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ HL.SW.v1.0.G010120.1 329 TENISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 379 789**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.95	318	399	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-24	331	379	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.68E-20	533	623	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-20	537	618	No hit	No description
PROSITE profile	PS51745	19.78	538	621	IPR000270	PB1 domain
SMART	SM00666	1.0E-18	538	621	IPR000270	PB1 domain
Pfam	PF00564	3.3E-15	539	620	IPR000270	PB1 domain
CDD	cd06407	3.07E-31	539	620	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence Send to blast
MPTFKAVVDL RSSQNFSPPS VCDELYQAVL TEIVEVLVSV CKTHRIPLAQ TWAPCHQQGH 60 AGENYARCVS SASLVSDLEL LGFHEACSQH HLFRGQGIVG AAFTTNKPCF ATDTTSFDKT 120 EYPLSHHARM FGLRAAVAIP LRSISAGSFF DFVLELFLPK DCQDPEEQKQ ISNSLSFVIQ 180 QACDCKSLRV IVEKELEEDR VMLPTGDQTV GATTTTTTNT TTYPVGVQSS GKESSWVDHM 240 MEAQQQGRGV SASLDYLTEE PDEEFRVTPH GVNLNHGDLP KGKVSTDFGQ LQKCSGSKES 300 SNGGADSHSF DCHSSSGARK AGEKRTRSTE NISLPVLRQY FAGSLKDAAK SIGVCPTTLK 360 RICRQHGITR WPSRKIKKVG HSLMKLQLMI DSVEGADGAI QIGSFYSSIP QLNSPKFPGN 420 NNDSSSSVNP SKQQYNQHLN SQSNSQLESG IYNHGLAMKP PSSMSSQASA LHQHKTTTFD 480 GFNGDSLITE DTSVILNGSC SSDRELLASS REENQIMDQT LPPLPENNVG IDSRNKSAFR 540 VKVNFGDKKI RFSLIANSSF RELQLEIMKR FNLDDIAMID IKYLDDDRDW ILLTCNADLQ 600 ECFELHSQSL NHKMRLCLQQ TSSEQRIEAS HFESSSSSHA SGNHYRPV*

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence Send to blast

MPTFKAVVDL RSSQNFSPPS VCDELYQAVL TEIVEVLVSV CKTHRIPLAQ TWAPCHQQGH  60
AGENYARCVS SASLVSDLEL LGFHEACSQH HLFRGQGIVG AAFTTNKPCF ATDTTSFDKT  120
EYPLSHHARM FGLRAAVAIP LRSISAGSFF DFVLELFLPK DCQDPEEQKQ ISNSLSFVIQ  180
QACDCKSLRV IVEKELEEDR VMLPTGDQTV GATTTTTTNT TTYPVGVQSS GKESSWVDHM  240
MEAQQQGRGV SASLDYLTEE PDEEFRVTPH GVNLNHGDLP KGKVSTDFGQ LQKCSGSKES  300
SNGGADSHSF DCHSSSGARK AGEKRTRSTE NISLPVLRQY FAGSLKDAAK SIGVCPTTLK  360
RICRQHGITR WPSRKIKKVG HSLMKLQLMI DSVEGADGAI QIGSFYSSIP QLNSPKFPGN  420
NNDSSSSVNP SKQQYNQHLN SQSNSQLESG IYNHGLAMKP PSSMSSQASA LHQHKTTTFD  480
GFNGDSLITE DTSVILNGSC SSDRELLASS REENQIMDQT LPPLPENNVG IDSRNKSAFR  540
VKVNFGDKKI RFSLIANSSF RELQLEIMKR FNLDDIAMID IKYLDDDRDW ILLTCNADLQ  600
ECFELHSQSL NHKMRLCLQQ TSSEQRIEAS HFESSSSSHA SGNHYRPV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010111706.2	0.0	LOW QUALITY PROTEIN: protein NLP2
TrEMBL	A0A221I0U9	0.0	A0A221I0U9_PARRI; Truncated nodule inception protein
TrEMBL	A0A221I0W5	0.0	A0A221I0W5_9ROSA; Truncated nodule inception protein
STRING	XP_008235979.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	1e-151	Nin-like family protein