PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009855.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HSF
Protein Properties Length: 324aa    MW: 36857.1 Da    PI: 7.3308
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009855.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35311232103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d+ +++++sw +++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+  ++         weF++++F+kg 
  HL.SW.v1.0.G009855.1  31 FLTKTYQLVDDPLTDDIVSWGDDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKIVADR---------WEFANEYFRKGA 110
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i+r+k +
  HL.SW.v1.0.G009855.1 111 KHLLSEIHRRKAS 123
                           **********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3721114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-5727120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3328120IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.8E-193154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.5E-3131120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MALAIESNIM RCHEESKVFT VESQKAVPAP FLTKTYQLVD DPLTDDIVSW GDDETTFVVW  60
RPPEFARDLL PNYFKHNNFS SFVRQLNTYG FKKIVADRWE FANEYFRKGA KHLLSEIHRR  120
KASQQQQQYY QTINNHHLQL GDQQQHHYSH VTFQQADYND TAFGWSNTTS KFSETPSPLL  180
ESDHHNPKPY ADDHNILSVL TQDNQRLRRK NFMLMSELTH MKTLYNDIIY FIQNHVQPVV  240
PSAVGTSGSA ILKIMEQGSS SPVRNHVSDG KVNSSGSMDF TKSCGALTTH DDKNGTNSGV  300
KLFGVSLSGR KRVHPETTTD SSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2141202129Heat shock factor protein 1
5d5v_B5e-2141202129Heat shock factor protein 1
5d5v_D5e-2141202129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088963.21e-129heat stress transcription factor B-4b
SwissprotQ9C6353e-86HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2P5DR001e-152A0A2P5DR00_PARAD; Heat shock transcription factor
STRINGXP_010088963.11e-126(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-84heat shock transcription factor B4