PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009846.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 555aa    MW: 61996.2 Da    PI: 6.6953
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009846.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.71.9e-1371825542374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           +++L+ cA+avs++dl  a++l+++l+ ++s +g+p+qRl ay++e+L a+la+s+s+++k+l+++e +   sse l+++++++e++P+
  HL.SW.v1.0.G009846.1 182 KQVLICCAKAVSDNDLLTAEWLMNELRGMVSVSGEPIQRLGAYMLEGLVAKLASSGSNICKSLQCKEPA---SSELLSYMHILYELCPY 267
                           689*****************************************************************9...9**************** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                           +kf+++ aN aI ea++  +rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg++++ s   +   l+ +g++L++fAe+++vpfe
  HL.SW.v1.0.G009846.1 268 FKFGYMSANGAIAEAMKDVNRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSVSAyaRGGGLSIVGKKLSRFAETFKVPFE 356
                           ***********************************************************888899999********************* PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           f+  vak+ ++++le+L v pgEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rf+e+l+yy+a
  HL.SW.v1.0.G009846.1 357 FHS-VAKSGSEVQLEDLVVPPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFVETLNYYTA 444
                           ***.7************************************************************************************ PP

                  GRAS 267 lfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                           +f+s++++lpr++   +eri+vE+++l+re+vn++aceg+er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll+++ ++ yr+e
  HL.SW.v1.0.G009846.1 445 MFESIDVTLPRHHkehKERINVEQHCLAREVVNIIACEGTERVERHELLGKWQSRFKMAGFTPYPLSTLVNATIKTLLENYCNK-YRLE 532
                           **********9988889*****************************************************************66.**** PP

                  GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                           e++g+l+lgW++r Lv+ SaW+
  HL.SW.v1.0.G009846.1 533 ERDGALYLGWMNRYLVTSSAWK 554
                           *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.459155535IPR005202Transcription factor GRAS
PfamPF035146.7E-135182554IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MQRSQKRRSS NMANRLYYQP PLQDVESYCL PQFGSSDSEL CYSYSSRSQG GAQVSAKNPF  60
QLYATLESSP AIENINMYIS PSTVSFSPNG SPISQQDSHS YLPDQRNSPE NTYGSPISGS  120
CITDDMSDWK YKLKELESAM LGPDLSIQGN YNTGFQRGAN NSSNETESWG QIMEPISKKD  180
VKQVLICCAK AVSDNDLLTA EWLMNELRGM VSVSGEPIQR LGAYMLEGLV AKLASSGSNI  240
CKSLQCKEPA SSELLSYMHI LYELCPYFKF GYMSANGAIA EAMKDVNRVH IIDFQIGQGS  300
QWITLIQAFA ARPGGPPHIR ITGIDDSVSA YARGGGLSIV GKKLSRFAET FKVPFEFHSV  360
AKSGSEVQLE DLVVPPGEAL AVNFAFMLHH MPDESVSTQN HRDRLLRLVK SLSPKVVTLV  420
EQESNTNTAA FFPRFVETLN YYTAMFESID VTLPRHHKEH KERINVEQHC LAREVVNIIA  480
CEGTERVERH ELLGKWQSRF KMAGFTPYPL STLVNATIKT LLENYCNKYR LEERDGALYL  540
GWMNRYLVTS SAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-661815545375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032068.10.0scarecrow-like transcription factor PAT1
RefseqXP_024032069.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2P5ESL00.0A0A2P5ESL0_TREOI; GRAS transcription factor
STRINGXP_010112792.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]