PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G009825.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 458aa MW: 50139.6 Da PI: 9.0326 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.2 | 4.6e-16 | 260 | 305 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq HL.SW.v1.0.G009825.1 260 HNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIDYLKQLQ 305 9************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.625 | 255 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-19 | 258 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.39E-16 | 260 | 309 | No hit | No description |
Pfam | PF00010 | 1.3E-13 | 260 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.4E-19 | 260 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-17 | 261 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MIHFHKYIES KKREKEKYHM SMSHYVVPKW NLRHQRQEQV EGEEGNRSSH VQTHSSSSNS 60 AHLVPISRCN NEVKELTWEN GHLAMHGLGG LLPSGPIKPT SGRTGDTLES IVHQATTCNN 120 QVQDPYVTYH GQTPATMGSK IVAPSGGKRA ENAFQAPPVM RKRNRSNSNH DGMSFSSNCG 180 IQEEQGGPSA CACASATFCK ENDTTMMTWA SFESPQSLKN KSNDEDSACH GGLENQDEDQ 240 ETKGESRRSN STRSHAAAIH NQSERRRRDR INQKMKALQK LVPNASKTDK ASMLDEVIDY 300 LKQLQTQVQV MSSVRNMSPQ TVMSLGMQQQ LQMSMLARMG MGMGMGVGVG MGMLDMSSVA 360 RSSPQALPSL IHPTAATTTG STFVLPPFMV PPMLMAQASK PGTADTSSSS LVPLPDPYCA 420 LMAQSMNMEL YNKMAALYSH QVNQTRQASK SSKSSQV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 263 | 268 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015571977.1 | 1e-170 | transcription factor PIF7 isoform X1 | ||||
TrEMBL | A0A2P5FW11 | 0.0 | A0A2P5FW11_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010106642.1 | 1e-176 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12999 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 8e-37 | bHLH family protein |