PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G009671.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | DBB | ||||||||
Protein Properties | Length: 193aa MW: 20500.7 Da PI: 4.9668 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.1 | 2.7e-06 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +++++ +C+++ +lC +C + H+ H++ HL.SW.v1.0.G009671.1 5 CDYCGDQRSMVYCRSDAACLCLSCDRNVHSAnilskrHSR 44 *****************************65677777776 PP | |||||||
2 | zf-B_box | 23 | 1.7e-07 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 +C++++++++ C + ++ lC++C +H g H++++ HL.SW.v1.0.G009671.1 46 LICERCHSQPALVRCAEERVSLCQNCDWMGH-GastssstHKRQT 89 68*****************************.5588888898776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.471 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.20E-6 | 4 | 47 | No hit | No description |
SMART | SM00336 | 2.5E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.702 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.48E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.47 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MGYLCDYCGD QRSMVYCRSD AACLCLSCDR NVHSANILSK RHSRTLICER CHSQPALVRC 60 AEERVSLCQN CDWMGHGAST SSSTHKRQTI RCYSGCPSAA ELSSIWSSIL DSPIGGESAC 120 EQEMGLMSIN ENSSGNDPGP SENASCSVGV NSGTSMAKAS VWPSSSSVPE INAASQVQDL 180 PDESDNATFP KV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024028610.1 | 1e-107 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9LUA9 | 1e-69 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A2P5ER89 | 1e-116 | A0A2P5ER89_TREOI; Zinc finger-domain containing protein | ||||
STRING | XP_010107355.1 | 1e-106 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 5e-72 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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