PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G009614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | GATA | ||||||||
Protein Properties | Length: 344aa MW: 37370.5 Da PI: 4.9534 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.8 | 6.2e-18 | 260 | 293 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C + kTp+WR gp g+ktLCnaCG+++++ + HL.SW.v1.0.G009614.1 260 CSHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGR 293 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.0E-81 | 18 | 333 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 10.936 | 254 | 290 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.9E-13 | 254 | 308 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.28E-13 | 255 | 316 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-13 | 258 | 291 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.25E-12 | 259 | 316 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 260 | 285 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.1E-15 | 260 | 293 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MEGMEAKALR PSLRGELAQF ELFEEIYCST TNINNGAGLS CVPSEDFSID DLLNLQNGEF 60 EDGSVEEEEE EEEKYSLCVD EESLNVSGGY TGAGDSESAL TSELAVPDDD LAELEWVSHF 120 VDDSFSDFSL LHPIGKQRTE LHSENRFEQP EPTRTGTSPT CFPSVPVKTR TKRARPTTQS 180 WSRSNSLSPL TESSTSSSSS VASSPSSASF SSTPCLIFTN TVQAVEFLPS LSEPASKKQK 240 KKPAVQTGAA PVGPQFQRRC SHCLVQKTPQ WRTGPLGPKT LCNACGVRFK SGRLFPEYRP 300 ACSPTFSSEV HSNSHRKVLE MRKKKEVVGP GPGSGLTHVI SSF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010109771.1 | 1e-122 | GATA transcription factor 7 | ||||
TrEMBL | A0A2P5BGS0 | 1e-158 | A0A2P5BGS0_PARAD; GATA transcription factor | ||||
STRING | XP_010109771.1 | 1e-121 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 3e-48 | GATA transcription factor 5 |