PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009222.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family G2-like
Protein Properties Length: 346aa    MW: 38381.7 Da    PI: 7.3037
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009222.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.82.2e-321569155
               G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          kprl+Wt+eLH+rFvea++qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl
  HL.SW.v1.0.G009222.1 15 KPRLKWTSELHQRFVEAINQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 69
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.1461272IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-301371IPR009057Homeodomain-like
SuperFamilySSF466891.2E-161470IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-231570IPR006447Myb domain, plants
PfamPF002499.5E-81768IPR001005SANT/Myb domain
PfamPF143795.8E-23119165IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MQNQNMNLVL STDAKPRLKW TSELHQRFVE AINQLGGADK ATPKSLMRVM GIPGLTLYHL  60
KSHLQKYRLG KSQQSEACSD NKQEGGFNAS DYKEIQGSDG HFNGEINDGT QSQMNEGLQI  120
AQALQMQMEV QRKLHEQIEV QRHLQLRIEA QGKYLQSVLK KAQETLSGYS SSSVGVELTK  180
AELSRLLSMV NNGCPSSSFS EITETRDLSL EEGIERKQMR GTMCSVESSL TSSESSGRKE  240
EKKPMNNNGD PQKSNTNSIE LQLMEVHPEN NPWNNATSNQ VSGRKRNGST ISDGISVEQR  300
ISKRSPSHID TNSNHLRKSG LLGTFDLNSQ YQNDIDSGPK AIDLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-191471158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-191471158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-191571157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-191571157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-191571157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-191571157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-191471158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-191471158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-191471158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-191471158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-191471158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-191471158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895130.10.0myb family transcription factor PHL8 isoform X1
SwissprotF4I2744e-87PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2P5AEU90.0A0A2P5AEU9_TREOI; Octamer-binding transcription factor
STRINGXP_010108678.11e-180(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.12e-87G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]