PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G009117.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 311aa MW: 35305 Da PI: 6.9209 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7.3e-18 | 96 | 149 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k HL.SW.v1.0.G009117.1 96 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 149 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.2 | 1.6e-41 | 95 | 187 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+k++n+ L++++++L++ HL.SW.v1.0.G009117.1 95 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKADNDVLQAQNQKLQA 183 69**************************************************************************************9 PP HD-ZIP_I/II 90 elke 93 e+++ HL.SW.v1.0.G009117.1 184 EISA 187 9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.27E-19 | 88 | 153 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 91 | 151 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 94 | 155 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-15 | 96 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.53E-15 | 96 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-19 | 98 | 158 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 122 | 131 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 126 | 149 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 131 | 147 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.2E-15 | 151 | 191 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MSGNGMAFFP TNFMLQTPSE EDHHHHHNHN HNHNHHHHPP SSLNPINLPP CTPQEFHGVA 60 SFLGKRSVSF SGIELGEEGN GGEDDLSDDG SQAGEKKRRL NMEQVKTLEK NFELGNKLEP 120 ERKMQLARAL GLQPRQIAIW FQNRRARWKT KQLEKDYDLL KRQFEAIKAD NDVLQAQNQK 180 LQAEISALKN REPTESINLN KETDQGSCSN RSDNSSDIKL DISRTPAAID SPLSSHPRAL 240 FPTSMRPSSG HHVAQLFQTS SSARSSDQQL QYQKNDHHHH VVKEESLSNM FCGIDDQSGF 300 WPWLEHQHFN * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 151 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018857022.1 | 1e-165 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 1e-119 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A2P5AUL2 | 0.0 | A0A2P5AUL2_PARAD; Octamer-binding transcription factor | ||||
STRING | EOY02000 | 1e-160 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-106 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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