PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009054.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TALE
Protein Properties Length: 782aa    MW: 85813.7 Da    PI: 7.2395
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009054.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-096106471954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  HL.SW.v1.0.G009054.1 610 FEHflHPYPTDTDKHMLATQTGLTRNQVSNWFINARVR 647
                           664459******************************87 PP
2BELL112.52.3e-36458528272
                  BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           r e+q+kkakLl + eeV +rYkqy++q+++v+ssFe vaglgs++pY+slAl aiSrhFrcLk+ai++q+
  HL.SW.v1.0.G009054.1 458 RPEHQQKKAKLLYMHEEVGRRYKQYRQQMEMVVSSFESVAGLGSSTPYISLALEAISRHFRCLKNAISDQL 528
                           569*****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-39355526IPR006563POX domain
PfamPF075261.8E-40360525IPR006563POX domain
PROSITE profilePS5007111.872588651IPR001356Homeobox domain
SMARTSM003893.1E-8591655IPR001356Homeobox domain
CDDcd000862.34E-11591652No hitNo description
SuperFamilySSF466898.13E-17593657IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-28594655IPR009057Homeodomain-like
PfamPF059206.5E-18608647IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
METSGVFRPE SHVPQQSRRD KLRVQQATSS SNIAVPMSHH LDYNPHNNLE HFSSSSTLNH  60
PDHHHQHHNY NLTIRNNPSN NFIFDPSVLS SEMLNFSRNN VLPSPNHHQP SRINSASTCH  120
GDPDQLSHEA AAAQMTERSL SSSMAVGDAS LSFPRSKPSE PQVSFINWRS LNNDSDPQQS  180
NFENWSSSTQ NISGQKYLEA MVMSGNELAL LPSFGNQSTT LRFDNISGSS SSSVMGNQQD  240
NRHQYEKREQ DAELLRTSDT VICDSHNLQG LSLSLSSNPT SSTLPSIPHH LGDHDHDDHR  300
ESKADEKSAY SGSVSMPKPS IISKACGSKS LQDIVGSSNN SSNPYRSSGP LGPFTGYATI  360
LKSSRFLRPA QQLLDDFCGS KEINVKITCD ISERISGGGG VSASVSVAAL SGSGSVDVIE  420
TEVLGKGSNS SASSSTFYGS NEISGDCGGG SISLESSRPE HQQKKAKLLY MHEEVGRRYK  480
QYRQQMEMVV SSFESVAGLG SSTPYISLAL EAISRHFRCL KNAISDQLKQ TRRALGEDLS  540
SFTTGSSSLT KGAIDALLSS TARLKYMEQS FLKHKSSGPN LSFPEPQQPV WRPQRGLPER  600
SVAILRAWLF EHFLHPYPTD TDKHMLATQT GLTRNQVSNW FINARVRVWK PMVEEIHMLE  660
TKGLTDRSNS INSGNHDHAM NNPVNNDQGT CSASHIDHTS TKLRAIVIAN NKQMECSGTG  720
YSSSPCNNRD RDGSFLVDQS QSQEKRSRLE GQVPTGMAGG ALVGFVPYHR TELEIWSHAR  780
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-16597654158Homeobox protein Meis1
4xrs_B5e-16597654158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900648.10.0BEL1-like homeodomain protein 10
RefseqXP_015900649.10.0BEL1-like homeodomain protein 10
RefseqXP_015900650.10.0BEL1-like homeodomain protein 10
RefseqXP_024922956.10.0BEL1-like homeodomain protein 10
TrEMBLA0A2P5FTT40.0A0A2P5FTT4_TREOI; Homeodomain transcription factor
STRINGXP_009356886.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.29e-68BEL1-like homeodomain 6