PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G008849.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NF-YA | ||||||||
Protein Properties | Length: 277aa MW: 30353.2 Da PI: 10.4286 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.6 | 1.6e-31 | 131 | 186 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++Il+RRq+Rak+e+++kl +++rkpylheSRh hAl+R RgsgGrF HL.SW.v1.0.G008849.1 131 GPIYVNAKQYHGILRRRQSRAKQEAQNKL-IRNRKPYLHESRHLHALNRVRGSGGRF 186 69***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.3E-34 | 128 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.25 | 129 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.0E-23 | 132 | 154 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.6E-27 | 132 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.0E-23 | 163 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MVVVTANPRR KRKKESKLVR ERGERKAEET CPSSSQQLCS LLLHNVSDSK GEDAMSSEGA 60 EDQMKTVFLL SKPDFMLNPS QVGGSHSMAS VPYPYADPYY GGFLTAYGPQ ALMVGLQSAR 120 VPLPLDLADN GPIYVNAKQY HGILRRRQSR AKQEAQNKLI RNRKPYLHES RHLHALNRVR 180 GSGGRFLSKK QLQHQSSDSN SSSSSSPKLL HQKKDTMNSG YAEYVTSVTT RSDTTLSVSD 240 SSGRRFSGAT SHMGGAMQCS GRLLHGGTQH CASVVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-20 | 132 | 191 | 4 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 9 | 13 | RKRKK |
2 | 9 | 14 | RKRKKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024017193.1 | 1e-119 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_024017194.1 | 1e-119 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Swissprot | Q93ZH2 | 5e-43 | NFYA3_ARATH; Nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A2P5BH09 | 1e-128 | A0A2P5BH09_TREOI; Nuclear transcription factor Y subunit A | ||||
STRING | XP_010090113.1 | 1e-101 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6949 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17590.4 | 2e-44 | nuclear factor Y, subunit A8 |