PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G008768.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 148aa MW: 16910 Da PI: 4.5744 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 45.2 | 2.7e-14 | 36 | 87 | 49 | 100 |
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lp e r +a++++ +eA++r++ PvyG+vg+i++lqqq+++++++la +++e HL.SW.v1.0.G008768.1 36 LPVELRAEAADAIHFEAKCRMEFPVYGCVGIISQLQQQIQNVETQLAITRAE 87 67889******************************************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 5.1E-12 | 35 | 85 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MILAVLFANS EGNILVERFN GVPAEERLHW RPFLRLPVEL RAEAADAIHF EAKCRMEFPV 60 YGCVGIISQL QQQIQNVETQ LAITRAEIAF ITSNSADINV VQEQPHFQEE YSNLNHFNHS 120 FIQPQNDNII GQYDQMTNNS SSNWMNF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5DKN3 | 2e-39 | A0A2P5DKN3_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | XP_004140854.1 | 1e-20 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 7e-17 | LOB domain-containing protein 24 |