PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008729.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 593aa    MW: 65296.7 Da    PI: 6.6295
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008729.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.59.2e-892205912374
                  GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                           +e L+++A++++s+dl+laq +L rl+++  + p+g+    p+qR+a yf+eAL++ l++ +++++     + +s+ + ++++  +k+f
  HL.SW.v1.0.G008729.1 220 IEDLIRVADCFDSDDLQLAQVILDRLNQRlrSGPSGKpvgrPFQRAALYFKEALQSILSG-SNRTA----DRLSSWAEIVQTIRGYKAF 303
                           678*************************98755665544449*****************9.44444....455555558********** PP

                  GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfA 169
                           s +sPi+ fsh+t+Nqa+lea++g++ +H++Dfdi+ G+Q+++L+++La+++     +pp lR+T+v++ e   + e + ++e+L++f 
  HL.SW.v1.0.G008729.1 304 SGISPIPMFSHFTTNQALLEALSGSTFIHVVDFDIGLGGQYASLMKELAEKSeslrVNPPILRVTAVVPVE--YAVESRLIRENLTQFS 390
                           ***************************************************9666666***********55..99999*********** PP

                  GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse......s 252
                           +el+++f++++++++ +e+l+++++++++gE++aV ++ ++ r +            +L  v+++sP vvv+v+ e   +++      s
  HL.SW.v1.0.G008729.1 391 QELKIRFQIDFVLVRVFEALSFKAINFREGEKIAVLFSSAVLRRH---------GGGFLGEVRRVSPAVVVFVDGEGWGGEPgtapttS 470
                           *************************************99888886.........468*******************655444444566* PP

                  GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                           F + f+  le+ys++++sl+a +   +e  +k+E+++l+++i  +v ++ a+ +   ++ ++ re+++ aG++pv+ls++a  qa++ll
  HL.SW.v1.0.G008729.1 471 FRRNFVGGLEFYSMVMESLDAAM-VGAELVRKIEAFVLRPKIIGMVEAAAAAGVGGGRRTASFREMFHGAGMRPVHLSQFADFQAECLL 558
                           *******************8886.57788889********************************************************* PP

                  GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            kv+++g++v +++++l l+W++r+Lv++S+Wr
  HL.SW.v1.0.G008729.1 559 GKVQVRGFHVAKRQAELALCWHERALVATSVWR 591
                           ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.086193571IPR005202Transcription factor GRAS
PfamPF035143.2E-86220591IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MIVPVTTPQN NLNQSPNTKT DNNNNSNNNS THITNLCYEP TSVLDLRRSP SPVAGKPAKV  60
SAVSDVVFTH ATNESTLEWV DDQVLHNLDW DTIMRELGLH DDSVPAALKT STTAAAAMAT  120
ATTTTVVPQL NNPCVDPHQI TSHFLEFPHP QPFDPTHLVH STDFNFDHSS NSTFGSHHHN  180
LNLFEVSPDF HLGINNNSNN NNNNTANNQN NNWSIGFDFI EDLIRVADCF DSDDLQLAQV  240
ILDRLNQRLR SGPSGKPVGR PFQRAALYFK EALQSILSGS NRTADRLSSW AEIVQTIRGY  300
KAFSGISPIP MFSHFTTNQA LLEALSGSTF IHVVDFDIGL GGQYASLMKE LAEKSESLRV  360
NPPILRVTAV VPVEYAVESR LIRENLTQFS QELKIRFQID FVLVRVFEAL SFKAINFREG  420
EKIAVLFSSA VLRRHGGGFL GEVRRVSPAV VVFVDGEGWG GEPGTAPTTS FRRNFVGGLE  480
FYSMVMESLD AAMVGAELVR KIEAFVLRPK IIGMVEAAAA AGVGGGRRTA SFREMFHGAG  540
MRPVHLSQFA DFQAECLLGK VQVRGFHVAK RQAELALCWH ERALVATSVW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-2522559024377Protein SCARECROW
5b3h_D7e-2522559024377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099836.10.0scarecrow-like protein 15
SwissprotO232101e-168SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2P5FXR70.0A0A2P5FXR7_TREOI; GRAS transcription factor
STRINGXP_010099836.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-148GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]