PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008644.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HSF
Protein Properties Length: 426aa    MW: 45516.7 Da    PI: 5.6987
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008644.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.7e-36451362102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d+++++lisw+++g+sf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+
  HL.SW.v1.0.G008644.1  45 FLTKTYQLVDDPAVDDLISWNDDGSSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDYFRRGE 124
                           9*****************************************************************99.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k ll++i+r+k 
  HL.SW.v1.0.G008644.1 125 KGLLRDIQRRKI 136
                           *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.4E-6041134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.1E-3842134IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3542134IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.2E-3245134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-204568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-2096108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1702.6E-4198225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAPLPVEQIG ESGLSGSGGG GGGGGGVSGG GSGGADSQRT LPTPFLTKTY QLVDDPAVDD  60
LISWNDDGSS FIVWRPAEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDYF  120
RRGEKGLLRD IQRRKISPTG AAAAATAAAA AAVTVAAVPL AALVSPSNSG EEQVISSNSS  180
PVAPPVAAVH CMTSCTTVPE LVEENERLRK ENSRLSHELT QLRGLCNNIL TLMTNFASNQ  240
MVAGGGGGVA EEKPMDLMRA SEVTAANGGT PAGLNPEERK DEDEDIRPRL FGVSIGVKRA  300
RKDEEEEEGD EDGQNQQQPI VRDLGHDVKS EPSDAHSSDH NQDPCGDRRR MVQQQSRGGS  360
VPRGGVCGFG SSALSKKLLF HLGVPRRCED DLGKLFSNQI LFSSPVTANM KRYHILGTSY  420
GLTSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A5e-264513410110Heat shock factor protein 1
5hdn_A5e-264513410110Heat shock factor protein 1
5hdn_B5e-264513410110Heat shock factor protein 1
5hdn_C5e-264513410110Heat shock factor protein 1
5hdn_D5e-264513410110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11631SGGGGGGGGGVSGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086969.11e-133heat stress transcription factor B-2b
RefseqXP_012086971.11e-133heat stress transcription factor B-2b
RefseqXP_012086972.11e-133heat stress transcription factor B-2b
SwissprotQ9T0D31e-95HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A2P5CBB91e-135A0A2P5CBB9_PARAD; Heat shock transcription factor
STRINGVIT_02s0025g04170.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-89HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]