PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G008452.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | GRF | ||||||||
Protein Properties | Length: 391aa MW: 42503.1 Da PI: 8.6663 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 82 | 5.2e-26 | 133 | 176 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgr+rsrk++e HL.SW.v1.0.G008452.1 133 DPEPGRCRRTDGKKWRCSRDVVVGQKYCERHMHRGRNRSRKPVE 176 79***************************************987 PP | |||||||
2 | QLQ | 51.1 | 4.1e-18 | 85 | 121 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+++y++a++ vPpeLlq+i+k HL.SW.v1.0.G008452.1 85 SYFSLAQWQELELQALIFRYMLAGATVPPELLQHIKK 121 79*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.7E-10 | 85 | 121 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.485 | 86 | 121 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.1E-13 | 86 | 119 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.87 | 133 | 177 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.9E-22 | 134 | 176 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MDFHLKQWRN QQHESEHHQQ HSAKIPKLVI ETHHMKPELS SGSEPLPLFV PEPNITKMIT 60 SGTLSAFSAD STTSASTTRI PRMGSYFSLA QWQELELQAL IFRYMLAGAT VPPELLQHIK 120 KSFNLHTTPT AMDPEPGRCR RTDGKKWRCS RDVVVGQKYC ERHMHRGRNR SRKPVEIPTP 180 TTTGGRPAGD GGRGTLASNT GPPPLSTSSN AAHFSLSVPS SSVDLLHLNN RSNTSDVKNE 240 NKDLFKPHNE VSGDGKSDGH ILRHFFDDWP RSHQESGNVG NNNNNSNNHN NTSPMNTATS 300 LSISIPGNPS SSDVSLKLST GNGELGHQEA HSDREQLGWA ATGWASNPMA SMGGPLAEAL 360 RSSNSNSSPT SVLHQLPPRA SASDTCIVSS * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024923489.1 | 1e-143 | growth-regulating factor 3 isoform X2 | ||||
TrEMBL | A0A2P5C4P5 | 1e-173 | A0A2P5C4P5_TREOI; Growth-regulating factor | ||||
STRING | XP_008241279.1 | 1e-134 | (Prunus mume) | ||||
STRING | XP_010089399.1 | 1e-134 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7895 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 9e-64 | growth-regulating factor 4 |