PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G008324.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 327aa MW: 35573.2 Da PI: 4.9447 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58 | 1.3e-18 | 243 | 277 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l HL.SW.v1.0.G008324.1 243 CSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRL 277 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.3E-82 | 1 | 318 | IPR016679 | Transcription factor, GATA, plant |
SuperFamily | SSF57716 | 4.28E-14 | 236 | 299 | No hit | No description |
SMART | SM00401 | 1.1E-15 | 237 | 291 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.886 | 237 | 273 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.7E-14 | 241 | 275 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.14E-14 | 242 | 290 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 243 | 268 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.8E-16 | 243 | 277 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MECVEAAFKT SFEENGVTTD DFFVDDLLNF SNEDGFVEEE EPEEEEDKGF ASVSPSQNQN 60 QNQNQTEAEL DNSNPTSTSF SPKHEFGPVP ATTELSVPVD ELANLEWLSH FVEDSFSEFS 120 TPYLAGVSAE KPKNQTEEVS EPKKLTLPEQ PCFSTPVPAK ARSKRARTGG RVWSLGSPSL 180 TESSSSSTSS SSSSSLSSPW LLYQTLSQDP AGSVEKPPAK KAKKKSTQTD ATGSLTGQPS 240 RRCSHCGVQK TPQWRTGPLG AKTLCNACGV RFKSGRLLPE YRPACSPTFS SELHSNHHRK 300 VLEMRRKKED VPVAESGFAP PVVPSF* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007204696.2 | 1e-121 | GATA transcription factor 5 | ||||
Refseq | XP_008241780.1 | 1e-121 | PREDICTED: GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 3e-84 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A2P5FNY2 | 1e-137 | A0A2P5FNY2_TREOI; GATA transcription factor | ||||
STRING | EMJ05895 | 1e-122 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66320.2 | 3e-75 | GATA transcription factor 5 |