PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008160.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 375aa    MW: 41948.9 Da    PI: 7.0039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008160.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.5e-14165216155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ ++ Lr+++P++   + ++ + a+i+  A++++k+L+
  HL.SW.v1.0.G008160.1 165 QRMTHIAVERNRRKQMNDYLAVLRSMMPSS---YVQRGDQASIVGGAINFVKELE 216
                           79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-17163233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-13163220No hitNo description
PROSITE profilePS5088815.059164215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-11165216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-13165232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9170221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MALETELFQQ DPFGYIISGL NKDLHAMVGG SGGGGPWNYG YVFQENDMNI HYNDLTNDNR  60
FVGHGFNNVL MDLESITSPS SMELQGLNNN HHRRHHHHDA PKFSSAAEYF TGNYRSSTTT  120
LDGGPQSHMF SPAAETTPAT TATTTVRRKR RRIRSVKNKE EVENQRMTHI AVERNRRKQM  180
NDYLAVLRSM MPSSYVQRGD QASIVGGAIN FVKELEQLLQ FLEAQKRSSK TKKQSPSVSD  240
QYHSSNSDSS NSLFSDFFIF PQYSTCSSNK TIDQTNSTAE KRSAVADVEV TMVESHANIK  300
VLQKSHHNQL LKMVVGLQLL RLVVLHLNVT TVDNMVLYSF SVKVEDDSHL TSVNEIAASV  360
FEMVGSIQEE SCLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147151RKRRR
2148152KRRRI
3165176RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106299.11e-125transcription factor bHLH96
TrEMBLA0A2P5BEY81e-150A0A2P5BEY8_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010106299.11e-125(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-49bHLH family protein