PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G008123.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | AP2 | ||||||||
Protein Properties | Length: 445aa MW: 48855.7 Da PI: 8.7409 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.7 | 2.9e-13 | 71 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g HL.SW.v1.0.G008123.1 71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 127 57*******************6666777775555599******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.4E-9 | 71 | 127 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-15 | 71 | 136 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-12 | 72 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.518 | 72 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-19 | 72 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-5 | 73 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-5 | 117 | 137 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MASSSSDPGL KPESSCGGGG GGGGGETSEA VIANDQLLLY RGLKKAKKER GCTAKERISK 60 MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL 120 AALKYWGPGT LINFPVTDYT RDLEEMQNVS REEYLASLRR KSSGFSRGIS KYRGLSSRWE 180 PSFGRMAGSE YLNSIHYGTG DDLATDSEFV GSLCFERKID FTNYIKWWGP NKNRQGESSV 240 KSSEDAKFGC AGDIGGELKT LEWAVQPTEP YQMPRLGVSP EVKQHKSSKV SALSILSRSA 300 AYKSLQEKAS KKQESNADND ENKNKNTMNK MDYGKAVEKS TNHDGASDRY AAALGMSGGL 360 SLQRNMNMFP LSPLLSAPLM TNYNTIDPLV DPIIWTSLAP VLPGGLSRTS EQTAAEADGE 420 FAFLLDLQFT QPRECTMLIQ RSCP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024027236.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X1 | ||||
Swissprot | Q8GWK2 | 1e-165 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A2P5EN46 | 0.0 | A0A2P5EN46_TREOI; AP2/ERF transcription factor | ||||
STRING | XP_010105336.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6007 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-163 | AP2 family protein |