PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008081.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 495aa    MW: 55857.8 Da    PI: 5.8335
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008081.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.52.1e-24106206186
              trihelix   1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 
                           +Wt+++v++Li a+ +++++ ++++              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++
  HL.SW.v1.0.G008081.1 106 KWTDDMVRLLIMAVYYIGDENGSEAtdptnkkkptggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACR 194
                           7**************998887765446677788999999**********************************************559* PP

              trihelix  75 ssstcpyfdqle 86 
                           ++++ +++d ++
  HL.SW.v1.0.G008081.1 195 VVENQSLLDTMD 206
                           ********9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-22104231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MANGLGGGLF STMGAGMLGL EMPLQQQQNP SNTQNSHLLS HSQMMAYGHH DADHHPQAQP  60
SVKHGYPYAS KSTKVLTLSD EDDPGFIADD TSGDGKRKMS PWQRMKWTDD MVRLLIMAVY  120
YIGDENGSEA TDPTNKKKPT GGLLQKKGKW KSVSRAMMEK GFYVSPQQCE DKFNDLNKRY  180
KRVNDILGKG TACRVVENQS LLDTMDLTPK MKEEVRKLLN SKHLFFREMC AYHNSCGHVG  240
ATTSNADGGA NGANPSSELN ASEPSSHVQP NQQNQQQRCF HTTDNSHVVS NLSRPETEHV  300
SKLVKASASG GEDEEDDDED DDSDDYDDDE DDEETEGGSR GPIGHGHEDI DDDNYERQRK  360
RPRKGVLSES SQLIQQLSCE ILAVIQDGSK SSWEKKQWLK SRMIQLEEQQ VNFQCEAFEL  420
EKQRLKWVKF SSKKEREMEK AKFENEKRRL ENERMVLLIR QKELEVLDLY HRSQQQQQHS  480
SNKRSGGDPS SITG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103346.10.0uncharacterized protein LOC21385857
TrEMBLA0A2P5C4X00.0A0A2P5C4X0_PARAD; Sequence-specific DNA binding transcription factor
STRINGXP_010103346.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-77sequence-specific DNA binding transcription factors