PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008070.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 583aa    MW: 64839.1 Da    PI: 4.5934
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008070.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.51e-1332125822374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           ++lL++cA  +s+g+ ++a+ ++++l++++s +g+p qR+aay++e+Laar+a+s++ lykal+++e +   +s++laa+++++ev+P+
  HL.SW.v1.0.G008070.1 212 RKLLIDCAALLSEGNIAEASIMINQLRQMVSVEGEPSQRIAAYMVEGLAARVASSGKFLYKALKCKEPP---TSDRLAAMQILFEVCPC 297
                           689*****************************************************************9...9**************** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           +kf++++aN aI ea++ e++vHi+Dfdi+qG Q++aL+q++a sR+ + p+lR+Tgv++pes+  s   l+ +g+ L+k Ae lgvpf
  HL.SW.v1.0.G008070.1 298 FKFGFMAANGAIIEAFKDEKTVHIVDFDINQGSQYMALIQTIAsSRKCKIPQLRLTGVDDPESVqrSVGGLKIIGQMLEKRAEDLGVPF 386
                           *******************************************8899***************9989999******************** PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           +f++ va+r++ +++++L+ +pgEal+Vn+++qlh+++desvs+ +erd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yys
  HL.SW.v1.0.G008070.1 387 KFQA-VASRTSLVTPSMLDRRPGEALVVNFAFQLHHMPDESVSTINERDQLLRMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYNYYS 474
                           ****.7*********************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           a+f+sl+a+lpres +r++vEr++l+r+ivn++aceg+er+er e ++kWr+r+ +aGF++ p+s++++++++ l+r++ ++ y++++e
  HL.SW.v1.0.G008070.1 475 AVFESLDATLPRESPDRTNVERQCLARDIVNIIACEGEERIERYEVAGKWRARMAMAGFTSCPMSSNVVDSIRELIRQYCDR-YKIKDE 562
                           ********************************************************************************66.****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                            gsl++gW+d++L+++S+Wr
  HL.SW.v1.0.G008070.1 563 MGSLLFGWEDKSLIVASSWR 582
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.055185563IPR005202Transcription factor GRAS
PfamPF035143.5E-131212582IPR005202Transcription factor GRAS
Gene3DG3DSA:3.40.50.1505.3E-4307535IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MSLVRPAELS ATSYRNPKLY SLKGSTDSSG FSTQTFGSDK RKTLYVTDSY SNESYEKYFL  60
DSPSDEIQQP SCSSASGNSY NPQDASCYQL RAGLVSQLTT QNPCDASFMS MRDLESDYLE  120
SSSPELGDFD KSSMRLKLQE LERALLNDND DEDDEDMFGS GQSMEVDVDW VGPAQNGLLN  180
DSPKESSSSD SYPSSISSSN KEISPISLQS PRKLLIDCAA LLSEGNIAEA SIMINQLRQM  240
VSVEGEPSQR IAAYMVEGLA ARVASSGKFL YKALKCKEPP TSDRLAAMQI LFEVCPCFKF  300
GFMAANGAII EAFKDEKTVH IVDFDINQGS QYMALIQTIA SSRKCKIPQL RLTGVDDPES  360
VQRSVGGLKI IGQMLEKRAE DLGVPFKFQA VASRTSLVTP SMLDRRPGEA LVVNFAFQLH  420
HMPDESVSTI NERDQLLRMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY NYYSAVFESL  480
DATLPRESPD RTNVERQCLA RDIVNIIACE GEERIERYEV AGKWRARMAM AGFTSCPMSS  540
NVVDSIRELI RQYCDRYKIK DEMGSLLFGW EDKSLIVASS WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6021858125377Protein SCARECROW
5b3h_D2e-6021858125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104285.10.0scarecrow-like protein 1
RefseqXP_024026462.10.0scarecrow-like protein 1
RefseqXP_024026463.10.0scarecrow-like protein 1
RefseqXP_024026464.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2P5FPJ10.0A0A2P5FPJ1_TREOI; GRAS transcription factor
STRINGXP_010104285.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]