PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007873.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TALE
Protein Properties Length: 414aa    MW: 45387.4 Da    PI: 7.2165
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007873.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.2e-091121491954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  HL.SW.v1.0.G007873.1 112 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 149
                           665559******************************88 PP
2BELL65.51.1e-211433072
                  BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                          +q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai  q+
  HL.SW.v1.0.G007873.1  1 MQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAILAQL 43
                          9**************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075262.3E-17139IPR006563POX domain
PROSITE profilePS5007112.56890153IPR001356Homeobox domain
CDDcd000861.11E-1293154No hitNo description
SMARTSM003891.2E-993157IPR001356Homeobox domain
SuperFamilySSF466891.45E-1794160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-2996159IPR009057Homeodomain-like
PfamPF059201.8E-18110149IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MQMVVNSFDL VMGFGAAVPY TALAQKAMSR HFRCLKDAIL AQLKHSCELL GEKDGAGTSG  60
ITKGETPRLK ILEQSLRQQR AFQSIGMMEQ EAWRPQRGLP ERSVNILRAW LFEHFLHPYP  120
SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMVEEMYQ QETKEEDTLS SDQERSDHHQ  180
HDQLMIRSSS NRNIINSQNS STSGHHQHHQ LLAQTPTTAA TQATTTLTPQ TTATTTATAT  240
ATRSDINAME SDPSLVAINN NSGIRQPFSE NQAAMIKQGQ QQAQHQHQQQ LQHQQQQHHQ  300
PFSTSTTPSS SELVAPPVAQ SFAAAAEDAC RRVSMVNAGD FGTITTPTTS SQNNNNMNIA  360
CSDHHNGGAA ALIAFGTTAT TTAGDVSLTL GLRHAGNMPE NTTSPFSVRD FGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-1699157563Homeobox protein Meis2
3k2a_B1e-1699157563Homeobox protein Meis2
4xrm_A1e-1699157563Homeobox protein Meis2
4xrm_B1e-1699157563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025689.11e-143PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_018830219.11e-143PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_018830220.11e-143PREDICTED: BEL1-like homeodomain protein 2
TrEMBLA0A2P5BZB10.0A0A2P5BZB1_PARAD; Knotted like homeodomain transcription factor
STRINGPOPTR_0007s12170.21e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-101BEL1-like homeodomain 2