PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G007766.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | CO-like | ||||||||
Protein Properties | Length: 390aa MW: 42783 Da PI: 5.1262 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.7 | 7.6e-06 | 2 | 44 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 e+ C+ +e ++ ++C+++ lC +C + H+ H++ HL.SW.v1.0.G007766.1 2 EPLCDFCEVVRAVIYCKSDLARLCLQCDVCVHSAnllsrrHER 44 689******99*********************65777777876 PP | |||||||
2 | CCT | 62.4 | 1.4e-21 | 333 | 376 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+k+R F K+irY+sRKa+A++R+RvKGrFvk+ HL.SW.v1.0.G007766.1 333 RDKAKMRYNEKKKNRTFGKQIRYASRKARADTRKRVKGRFVKAG 376 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.3E-6 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.83 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.39E-4 | 3 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.774 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00176 | 47 | 90 | No hit | No description |
PROSITE profile | PS51017 | 14.674 | 333 | 375 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.3E-16 | 333 | 375 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MEPLCDFCEV VRAVIYCKSD LARLCLQCDV CVHSANLLSR RHERSLLCDK CNRQAAIVRC 60 VDEKMSLCQS CDWSSGGSCS ATGHHQRQPM YSYTGCPSLA EFSNIFESLL NGPCLESHGW 120 GVEPTNKDQT IKSSSSSIVI PNADCMPYFD QDQPAFFGDE SVLSKGHPKL KDVNINIPDG 180 NDLFISLNMD AMNFGCNNEV FNSSQACVNR YQFDGGGMDS TILMEKNLSV TESNGPTESA 240 IEASSSGQQQ DCMAFQASQV CGSASVMQPM DGGSNCLLLN PTFPSAQVHS GISLSNITGE 300 SSATDYQDCG MSPVFLTGES WESSLEVSCP QARDKAKMRY NEKKKNRTFG KQIRYASRKA 360 RADTRKRVKG RFVKAGEEYD YDPLMTSDF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015881102.1 | 1e-154 | putative zinc finger protein CONSTANS-LIKE 11 | ||||
TrEMBL | A0A2P5D650 | 0.0 | A0A2P5D650_PARAD; Zinc finger-domain containing protein | ||||
STRING | evm.model.supercontig_8.239 | 1e-141 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7052 | 19 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21880.1 | 7e-92 | B-box type zinc finger protein with CCT domain |