PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007766.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family CO-like
Protein Properties Length: 390aa    MW: 42783 Da    PI: 5.1262
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007766.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.77.6e-06244339
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                          e+ C+ +e  ++ ++C+++   lC +C +  H+       H++
  HL.SW.v1.0.G007766.1  2 EPLCDFCEVVRAVIYCKSDLARLCLQCDVCVHSAnllsrrHER 44
                          689******99*********************65777777876 PP

2CCT62.41.4e-21333376144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R++a++RY+eK+k+R F K+irY+sRKa+A++R+RvKGrFvk+ 
  HL.SW.v1.0.G007766.1 333 RDKAKMRYNEKKKNRTFGKQIRYASRKARADTRKRVKGRFVKAG 376
                           899**************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-6147IPR000315B-box-type zinc finger
PROSITE profilePS501198.83147IPR000315B-box-type zinc finger
CDDcd000214.39E-4347No hitNo description
PROSITE profilePS501198.7744390IPR000315B-box-type zinc finger
CDDcd000210.001764790No hitNo description
PROSITE profilePS5101714.674333375IPR010402CCT domain
PfamPF062031.3E-16333375IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEPLCDFCEV VRAVIYCKSD LARLCLQCDV CVHSANLLSR RHERSLLCDK CNRQAAIVRC  60
VDEKMSLCQS CDWSSGGSCS ATGHHQRQPM YSYTGCPSLA EFSNIFESLL NGPCLESHGW  120
GVEPTNKDQT IKSSSSSIVI PNADCMPYFD QDQPAFFGDE SVLSKGHPKL KDVNINIPDG  180
NDLFISLNMD AMNFGCNNEV FNSSQACVNR YQFDGGGMDS TILMEKNLSV TESNGPTESA  240
IEASSSGQQQ DCMAFQASQV CGSASVMQPM DGGSNCLLLN PTFPSAQVHS GISLSNITGE  300
SSATDYQDCG MSPVFLTGES WESSLEVSCP QARDKAKMRY NEKKKNRTFG KQIRYASRKA  360
RADTRKRVKG RFVKAGEEYD YDPLMTSDF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881102.11e-154putative zinc finger protein CONSTANS-LIKE 11
TrEMBLA0A2P5D6500.0A0A2P5D650_PARAD; Zinc finger-domain containing protein
STRINGevm.model.supercontig_8.2391e-141(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.17e-92B-box type zinc finger protein with CCT domain