PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007526.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HSF
Protein Properties Length: 433aa    MW: 49928.3 Da    PI: 5.0364
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007526.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.5e-36931852103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d+++++++sws++g+sfvv+d++ fa ++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +++
  HL.SW.v1.0.G007526.1  93 FLTKTYDMVDDPSTNRVVSWSKDGSSFVVWDPHAFALNLLPRYFKHNNFSSFVRQLNTYGFRKIDADR---------WEFANEGFIRDQ 172
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i+r++ +
  HL.SW.v1.0.G007526.1 173 KHLLKSIRRRRAS 185
                           *********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.9E-3689182IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.7E-3989182IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6189182IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-2093116IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3293182IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-20131143IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340132156IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-20144156IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MFELFFNSVV PNIELFDQNP SYPIRPLDKV TKTQEKLRES QFQGMNFLYP VKEEYPGSGS  60
SSSSQYVCGD SQPLTMPAPQ PMEGLHDVGP PPFLTKTYDM VDDPSTNRVV SWSKDGSSFV  120
VWDPHAFALN LLPRYFKHNN FSSFVRQLNT YGFRKIDADR WEFANEGFIR DQKHLLKSIR  180
RRRASSQPFP HEQQALGPCV ELGRFGLDAE IDRLRRDKQV LMMELVKLRQ QQQNTRAYLQ  240
AMEQRLQGTE MKQQQMMAFL ARAMKNPAFL QQLVQQKERR KVIEEAMTKK RRRPIDQGPS  300
SRSSGIETSH GSIKVEPHES SNYGFEVSEL EALALEMQGF GKLRVEQEEG DEELEPPESG  360
DRELDDGFWE ELFSEEAKAV EDEDVNVLTD RFGYLGSSPR EQEELTERRI LVETILFLLV  420
ASVGLDKRLW QL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-249118518123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169182RDQKHLLKSIRRRR
2278292RRKVIEEAMTKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891434.10.0heat stress transcription factor A-7a-like
RefseqXP_015891435.10.0heat stress transcription factor A-7a-like
RefseqXP_024932846.10.0heat stress transcription factor A-7a-like
RefseqXP_024933008.10.0heat stress transcription factor A-7a-like isoform X2
SwissprotQ9LUH81e-126HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2P5FB070.0A0A2P5FB07_TREOI; Heat shock transcription factor
STRINGXP_010087101.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-123heat shock transcription factor A6B