PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007233.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bZIP
Protein Properties Length: 453aa    MW: 49357.5 Da    PI: 6.8915
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007233.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1513.1e-16251307359
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                           ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v++L  eN++L k+l   ++++ + 
  HL.SW.v1.0.G007233.1 251 DVKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRVENSSLLKRLTDVSQKYNEA 307
                           689*****************************************9999998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.1E-20249313IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.5E-12249305No hitNo description
PROSITE profilePS5021711.53251306IPR004827Basic-leucine zipper domain
PfamPF001708.5E-14252304IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.45E-11253303No hitNo description
PROSITE patternPS000360256271IPR004827Basic-leucine zipper domain
PfamPF124986.1E-38320441IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MIPMSSQRFQ LCKKIETEER KNSRKEKMDR VYSVDEISDW AAPPPPPPSS SNSGDEALKM  60
NRSASEWAFQ RFLQETSGSV TSAQPQPQPQ SQLLPPLPPP PSFSGDENDV VEIKAKDNLK  120
PSGTPLSSSY IPVDSEDYQA FLKSKLNLAC AAVAMSRGAL GNVQDSATSA DCGSQASFTS  180
VTQASSKGAV YDLSRSQDKD VNGSHVSPAL NIHKNSVVSL RPATSGSSRE HSDDDELEGE  240
TEITENMDPA DVKRVRRMLS NRESARRSRR RKQAHLTELE TQVAQLRVEN SSLLKRLTDV  300
SQKYNEAAVD NRVLKADVET LRAKVKMAEE MVKRITGSNL FNTVSEISSM DMPSFDGSPS  360
DTSTDAAVPG QENPNHHFYE SSYPVSSQDT KGNNNGSAET PAAVENGQQQ RSTAGSKMGR  420
TPSMQRVASL EQLQKRIRGG VRGPHSNGKQ QQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265272RRSRRRKQ
2267272SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024025188.11e-160light-inducible protein CPRF2
SwissprotQ990901e-115CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A2P5ENN30.0A0A2P5ENN3_TREOI; Basic-leucine zipper transcription factor
STRINGXP_008218261.11e-143(Prunus mume)
STRINGEMJ063761e-144(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-71bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]