PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G007160.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

GRAS

Protein Properties

Length: 655aa MW: 74811.8 Da PI: 8.4362

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G007160.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	366.3	4.3e-112	283	652	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lL++cA+av+s d++ a+ l +++++++spdgd++qRla+yf+++L+arla++ y+ l ++e s +++ l ++l+ ++P+l HL.SW.v1.0.G007160.1 283 TLLTQCAQAVASYDQRTATDLFKQIRQHSSPDGDATQRLAHYFANGLEARLAGTRAVSYSPLVSNEMS---VVDILRGHQLYITACPFL 368 69*************************************************666666666666665...************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 ++s+ aN++I++ +++++++HiiDf+i++G+QWp L+q L++ p+gpp+lR+Tg++ p++g +e++eet++rL++++++++vp e+ HL.SW.v1.0.G007160.1 369 RMSYCFANRTIMNLAKNAKTIHIIDFGIQYGFQWPGLIQRLSQTPGGPPKLRMTGIELPQPGfrPTERVEETKRRLENYCKRFNVPSEY 457 *********************************************************9*********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 n+ +ak++e++ +e+L+++++E ++Vn+ ++l+++lde+v ++++rd+vLkl+++++P+++++ ++ +n++ Fl+rf eal ++s+l HL.SW.v1.0.G007160.1 458 NM-IAKKWETICYEDLKINKDELVVVNCLHRLKHILDETVVINNPRDTVLKLIRRINPDIFIHGVSNGTYNAPFFLTRFREALLHFSSL 545 .7*********************************************************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 fd++++++pre++ r+ E+++ gr+i+n+vaceg+er+er e++++W+ r +aGFk+ pl+ ++ + +k ++ + + + ve+ + HL.SW.v1.0.G007160.1 546 FDMFDSTVPREERFRMEFEKAIYGRDIKNIVACEGTERVERPESYKQWQVRNVRAGFKQTPLDLEIFEAVKKKVQLSYHKDFIVEQLGE 634 **************************************************************************888**** PP GRAS 357 slvlgWkdrpLvsvSaWr 374 +l++gWk+r+++++S+W+ HL.SW.v1.0.G007160.1 635 WLLQGWKGRRIFAISCWK 652 ***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.353	255	632	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-109	283	652	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
MDTLLDDFAV SMNGFNYNPK SFSFYSNQSY VRDAIKHGGV LQPCDYSNGL HQHHSCESSQ 60 NSSTCSEVDS PGYSDSFTAT LKFISEMLME EEDLERKSLT LQDPLALQAA EKSFYDVLGQ 120 NYPPSSDKGE YVSSKPFPSS VKTSFDTRLV QGPIFGGVQS VARFRGNTTG KPTSSFSQKG 180 KTQMIDLDKD GVRLQRGKTN HQSGYDDVNS EEVRSSKHVA VKGDDFEPTE MLDRVLLYHG 240 ENEDELAQKL QQQQHGKQGK KSGKMKRSKK QDKDKGDMVD LWTLLTQCAQ AVASYDQRTA 300 TDLFKQIRQH SSPDGDATQR LAHYFANGLE ARLAGTRAVS YSPLVSNEMS VVDILRGHQL 360 YITACPFLRM SYCFANRTIM NLAKNAKTIH IIDFGIQYGF QWPGLIQRLS QTPGGPPKLR 420 MTGIELPQPG FRPTERVEET KRRLENYCKR FNVPSEYNMI AKKWETICYE DLKINKDELV 480 VVNCLHRLKH ILDETVVINN PRDTVLKLIR RINPDIFIHG VSNGTYNAPF FLTRFREALL 540 HFSSLFDMFD STVPREERFR MEFEKAIYGR DIKNIVACEG TERVERPESY KQWQVRNVRA 600 GFKQTPLDLE IFEAVKKKVQ LSYHKDFIVE QLGEWLLQGW KGRRIFAISC WKPV*

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

MDTLLDDFAV SMNGFNYNPK SFSFYSNQSY VRDAIKHGGV LQPCDYSNGL HQHHSCESSQ  60
NSSTCSEVDS PGYSDSFTAT LKFISEMLME EEDLERKSLT LQDPLALQAA EKSFYDVLGQ  120
NYPPSSDKGE YVSSKPFPSS VKTSFDTRLV QGPIFGGVQS VARFRGNTTG KPTSSFSQKG  180
KTQMIDLDKD GVRLQRGKTN HQSGYDDVNS EEVRSSKHVA VKGDDFEPTE MLDRVLLYHG  240
ENEDELAQKL QQQQHGKQGK KSGKMKRSKK QDKDKGDMVD LWTLLTQCAQ AVASYDQRTA  300
TDLFKQIRQH SSPDGDATQR LAHYFANGLE ARLAGTRAVS YSPLVSNEMS VVDILRGHQL  360
YITACPFLRM SYCFANRTIM NLAKNAKTIH IIDFGIQYGF QWPGLIQRLS QTPGGPPKLR  420
MTGIELPQPG FRPTERVEET KRRLENYCKR FNVPSEYNMI AKKWETICYE DLKINKDELV  480
VVNCLHRLKH ILDETVVINN PRDTVLKLIR RINPDIFIHG VSNGTYNAPF FLTRFREALL  540
HFSSLFDMFD STVPREERFR MEFEKAIYGR DIKNIVACEG TERVERPESY KQWQVRNVRA  600
GFKQTPLDLE IFEAVKKKVQ LSYHKDFIVE QLGEWLLQGW KGRRIFAISC WKPV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-43	285	652	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010106508.2	0.0	uncharacterized protein LOC21407972
TrEMBL	A0A2P5DQK5	0.0	A0A2P5DQK5_PARAD; GRAS transcription factor
STRING	XP_010106508.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-169	GRAS family protein