PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007024.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 692aa    MW: 78547 Da    PI: 6.3562
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007024.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.92.7e-1123206883373
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                            lL+ cA+avs++d ++a++lL++++ +++p+gd  qRla+ f++AL+arla++++e++++l + + s    ++ l  ++++  +sP+ 
  HL.SW.v1.0.G007024.1 320 ALLILCAQAVSANDIRNANELLKKIRRHSTPHGDGSQRLAHLFAKALEARLAGTGKEIFATLDSINIS---AVDMLRTYQTYISASPFK 405
                           789**********************************************************9999998...99**************** PP

                  GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k+s + aNq+I +a+e+++++HiiDf+i +G+QWp ++q+L+ Rp+gpp+lRiTg++ p++g   +e+++etg rLak++e++gvpfe+
  HL.SW.v1.0.G007024.1 406 KISIIFANQMIFKAAEKATKLHIIDFGILYGFQWPVFIQSLSRRPGGPPKLRITGIEFPQHGfrPEEMVKETGCRLAKYCERFGVPFEY 494
                           *************************************************************9*9************************* PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                           ++ +a++++++++e+L+++++E+laVn+ ++ ++llde+vs++s+r++vL+l+++++P+++ ++  +  +n + F++rf eal ++++l
  HL.SW.v1.0.G007024.1 495 HA-IAEQWQNIQIEDLKIDKDEVLAVNCLHRFKSLLDETVSVKSPRNAVLHLIRKIKPDIFAHAVFNGTYNVPFFVTRFREALFHFTSL 582
                           **.7************************************************************************************* PP

                  GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                           fd  ++ l+re+  r   E+ ++grei+nv+aceg er+er et+++W+ r ++aGF+++pl+ + +k +k+++++ + + + vee+s+
  HL.SW.v1.0.G007024.1 583 FDGADTILAREDPLRLAFEKDFIGREIMNVIACEGLERVERPETYKQWQLRNTRAGFRQLPLDMELVKRMKAIVKQGYHRDFVVEEDSN 671
                           *****************************************************************************9999******** PP

                  GRAS 357 slvlgWkdrpLvsvSaW 373
                           ++++gWk+r L + S+W
  HL.SW.v1.0.G007024.1 672 WMLQGWKGRILCASSCW 688
                           ***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.523292669IPR005202Transcription factor GRAS
PfamPF035149.4E-110320688IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MSSERVSPLD DGEFSNTALK YINQMLMDED MEAKPSMFYD PSALIATEKS LYEVLGKKYP  60
PSWNEHEHPL CRDQNCQSSD DSFRTSVSDC SEDISSSSSS STGNSIHSFG TSVDSRAHQP  120
SVLQNPPPAK FVFQSTSNSS SQSSANFPYN MGTSMGELQN LLSENELMLQ FKRGLEEGNK  180
FLPKDNQLVF HVENNYMSPY TNEKVSSELI EVEKDKREHL HFGLTEMKNH DREETDLVDG  240
RSNKQMAVCT DETGLSELFD KVLLFREEPE APTGTSDEAY QNNEVKNSRQ QGGQRHGTSS  300
GKTLKTKIQE IDKEVVDLLA LLILCAQAVS ANDIRNANEL LKKIRRHSTP HGDGSQRLAH  360
LFAKALEARL AGTGKEIFAT LDSINISAVD MLRTYQTYIS ASPFKKISII FANQMIFKAA  420
EKATKLHIID FGILYGFQWP VFIQSLSRRP GGPPKLRITG IEFPQHGFRP EEMVKETGCR  480
LAKYCERFGV PFEYHAIAEQ WQNIQIEDLK IDKDEVLAVN CLHRFKSLLD ETVSVKSPRN  540
AVLHLIRKIK PDIFAHAVFN GTYNVPFFVT RFREALFHFT SLFDGADTIL AREDPLRLAF  600
EKDFIGREIM NVIACEGLER VERPETYKQW QLRNTRAGFR QLPLDMELVK RMKAIVKQGY  660
HRDFVVEEDS NWMLQGWKGR ILCASSCWVP V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-533056906380Protein SCARECROW
5b3h_A6e-533016901379Protein SCARECROW
5b3h_D6e-533016901379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028134.10.0scarecrow-like protein 14 isoform X2
RefseqXP_024028135.10.0scarecrow-like protein 14 isoform X2
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2P5D6550.0A0A2P5D655_TREOI; GRAS transcription factor
STRINGXP_010106504.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]