PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G006849.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HSF
Protein Properties Length: 404aa    MW: 44582.8 Da    PI: 8.3145
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G006849.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.2e-36251172103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+
  HL.SW.v1.0.G006849.1  25 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGE 104
                           9*****************************************************************99.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i+r+k++
  HL.SW.v1.0.G006849.1 105 KHLLCEIHRRKTA 117
                           **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.5E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.41E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.7E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.8E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ  120
VTALNHLNHH HHHHHQYPHS SLGVNGPSFF TGFSSSRLSL SPASDSDDNP NWCDSPARGG  180
GTTAACAAAA GVAAVIAAGN NFNTSSTVTA LSEDNERLRR SNSMLMSELA HMRKLYNDII  240
YFVQNHVKPV APSNSYNPSS LLVCNAPVVL PSSLTSTTAN HNGSSVPKVV NNGLGYYYNN  300
PKPQNSPPNH HHHNQSQQPI TSLSQSNTTA SKSSVTIFEE PTSNFNGGCK TKLFGVPLHS  360
KKRLHPEYGS NNINISTKMD TNKARLVLEK DDLGLNLMPP STC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-222011625131Heat shock factor protein 1
5d5v_B9e-222011625131Heat shock factor protein 1
5d5v_D9e-222011625131Heat shock factor protein 1
5hdg_A7e-22211167112Heat shock factor protein 1
5hdn_A7e-22211167112Heat shock factor protein 1
5hdn_B7e-22211167112Heat shock factor protein 1
5hdn_C7e-22211167112Heat shock factor protein 1
5hdn_D7e-22211167112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884313.10.0heat stress transcription factor B-4
SwissprotQ9C6351e-109HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2P5F8U60.0A0A2P5F8U6_TREOI; Heat shock transcription factor
STRINGXP_010112180.11e-173(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-104heat shock transcription factor B4