PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G006556.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

C2H2

Protein Properties

Length: 479aa MW: 53671.1 Da PI: 9.3982

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G006556.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.7e-06	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H HL.SW.v1.0.G006556.1 43 YVCEICNQGFQRDQNLQMHRRRH 65 9*********************9 PP
2	zf-C2H2	13.2	0.00026	122	144	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ HL.SW.v1.0.G006556.1 122 WVCQRCSKAYAVHSDFKAHLKTC 144 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.6E-5	40	66	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-5	42	65	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0052	43	65	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	43	65	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS01359	0	45	127	IPR019786	Zinc finger, PHD-type, conserved site
SMART	SM00355	210	86	116	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	100	122	149	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MENTNIISSN NNNKRKRRPA GTPDPDAEVV SLSPKTLLES DRYVCEICNQ GFQRDQNLQM 60 HRRRHKVPWK LLKRETPAGV VRKRVFVCPE PSCLHHDPCH ALGDLVGIKK HFRRKHSNHK 120 QWVCQRCSKA YAVHSDFKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC TMGRLRSESH 180 ALQPAACLSR TASSPSPSST DTNLAMPMNT TTSNNPSDTT TTPALVILTS STRSPQIPIL 240 SKTTSTTSST NPRFHNLDLQ LSTTTTTTTT MSNPTLDENQ PSPKTDNNHQ ENQYSTQLQL 300 SIGSSDFGEK NESNTNNNIN HKSSPRESMM SSTTTTTMAN CNNMEKTRLM KEEVREQLRV 360 AMAEKSYAEE ARQQAKRQIE LAEKEFANAK RIRQQAQSEL DKAQALKEHA MKQLNSTLLQ 420 LTCHACKHHF HNNARTLSYI IATTSSDCAQ TLDNDRTTHI LPRSDHRLGK SATINNPS*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MENTNIISSN NNNKRKRRPA GTPDPDAEVV SLSPKTLLES DRYVCEICNQ GFQRDQNLQM  60
HRRRHKVPWK LLKRETPAGV VRKRVFVCPE PSCLHHDPCH ALGDLVGIKK HFRRKHSNHK  120
QWVCQRCSKA YAVHSDFKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC TMGRLRSESH  180
ALQPAACLSR TASSPSPSST DTNLAMPMNT TTSNNPSDTT TTPALVILTS STRSPQIPIL  240
SKTTSTTSST NPRFHNLDLQ LSTTTTTTTT MSNPTLDENQ PSPKTDNNHQ ENQYSTQLQL  300
SIGSSDFGEK NESNTNNNIN HKSSPRESMM SSTTTTTMAN CNNMEKTRLM KEEVREQLRV  360
AMAEKSYAEE ARQQAKRQIE LAEKEFANAK RIRQQAQSEL DKAQALKEHA MKQLNSTLLQ  420
LTCHACKHHF HNNARTLSYI IATTSSDCAQ TLDNDRTTHI LPRSDHRLGK SATINNPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-16	118	170	3	55	Zinc finger protein JACKDAW
5b3h_F	1e-16	118	170	3	55	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023926986.1	0.0	protein SHOOT GRAVITROPISM 5-like isoform X1
Swissprot	Q9C9X7	1e-126	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A2P5BDU0	0.0	A0A2P5BDU0_TREOI; TFIIH C1-like domain containing protein
STRING	POPTR_0012s03730.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1769	32	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-106	C2H2-like zinc finger protein

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]