PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G006453.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

WRKY

Protein Properties

Length: 290aa MW: 31556.9 Da PI: 5.077

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G006453.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.4e-30	97	155	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+ HL.SW.v1.0.G006453.1 97 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRIDPTMLVVTYSAEHNHP 155 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-31	90	157	IPR003657	WRKY domain
PROSITE profile	PS50811	32.661	91	157	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-26	93	157	IPR003657	WRKY domain
SMART	SM00774	7.7E-36	96	156	IPR003657	WRKY domain
Pfam	PF03106	5.4E-26	98	155	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDISTTGLIT VNNNNSFVGD TDRDSNDYYS AATTPGENGS DSPTSTTLFH DSKNIITTTI 60 SSPKKSRRAV QKRVLSIPIK EVEGSRLKGE TSSTPPSDSW AWRKYGQKPI KGSPYPRGYY 120 RCSSSKGCPA RKQVERSRID PTMLVVTYSA EHNHPWPASR NHHNHNSNQS ASLSAVKSAK 180 VEALEAQPDP EMEAEPEERF AGLIGDESLI GGDEFGWFGD METTSSPVLE SPIFAESGSV 240 FSSTTTTVAA AMVFPMREED ESLFADLGEL PECSLVFRHR GVGPQVEIC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-20	98	157	18	79	Disease resistance protein RRS1
5w3x_D	3e-20	98	157	18	79	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024026936.1	1e-119	probable WRKY transcription factor 65
Swissprot	Q9LP56	2e-86	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A2P5E553	1e-143	A0A2P5E553_PARAD; WRKY domain containing protein
STRING	XP_010104966.1	1e-112	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	6e-83	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]