PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G006414.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YA
Protein Properties Length: 323aa    MW: 35600.6 Da    PI: 9.9996
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G006414.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.8e-32157213158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +ep+YVNaKQy++Il+RRq+Rak+e e+k  +k+rkpylheSRh+hA+rR+Rg+gGrF
  HL.SW.v1.0.G006414.1 157 EEPVYVNAKQYHGILRRRQSRAKAELERKA-IKGRKPYLHESRHQHAMRRARGCGGRF 213
                           69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.0E-36155216IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.642156216IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.7E-27158213IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-24159181IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860161181IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.8E-24190213IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MMPGKAEHED RRPQHSATNV FQAGVYTQPW WREMATNTGT AMDETTSKSS FVERANGRVD  60
DGGGGTNFNK EVPATTASQS EHHAKIAPSS TVLTMGKHLD PNSQMELVGH SIVLTPYPFG  120
DPNYGGVLTP YGPQAMVPPH LYGMYPGRMP LPLEMEEEPV YVNAKQYHGI LRRRQSRAKA  180
ELERKAIKGR KPYLHESRHQ HAMRRARGCG GRFLNTKKAD DNVDSSTSEN GTNSNRNQST  240
QSIRDRNADS SSIQKDRPGS MVEDMGKMRT LSKGNGKSNN NGHSLSSSYD LRFTDGKDGD  300
CLGRERKSMR LNGSTHGAIP IK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20157220265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881708.11e-133nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_015881709.11e-133nuclear transcription factor Y subunit A-1-like isoform X2
TrEMBLA0A2P5DLP21e-176A0A2P5DLP2_PARAD; Nuclear transcription factor Y subunit A
STRINGXP_010088228.11e-134(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-41nuclear factor Y, subunit A1