PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G006244.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 278aa MW: 29929.8 Da PI: 7.131 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.9 | 1.3e-41 | 9 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrrkC+ +Cv+apyfp +qp+kfa+vhk++Gasnv k+l++lp +re+a+ sl+yeA+ar+rdPvyG+vg+i+ l+++l+q HL.SW.v1.0.G006244.1 9 PCAACKFLRRKCTLECVFAPYFPPDQPQKFACVHKVYGASNVAKILNELPVAHREEAVVSLAYEAQARLRDPVYGCVGFISVLHNRLKQ 97 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 +++el+++k+e HL.SW.v1.0.G006244.1 98 VQTELNAAKKE 108 *******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.643 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-41 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MSSSSSHSPC AACKFLRRKC TLECVFAPYF PPDQPQKFAC VHKVYGASNV AKILNELPVA 60 HREEAVVSLA YEAQARLRDP VYGCVGFISV LHNRLKQVQT ELNAAKKELA AYIGPQAMMI 120 PSYSLSSMPP MFGIPPNVSI GQQHQQFMIQ DPANHHLQHP MFVESAAQAQ QQQMRFNNGF 180 DQMGVASVGD IGVGIGGVFN NQMSSSGGGG GGSGSPSPAA AGVMSPTLSL QGSFNNNIFN 240 SQMQPHQTTV LHHNTLDYQL QSQLLLQSQH NSEAEES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-47 | 2 | 122 | 4 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-47 | 2 | 122 | 4 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008371805.1 | 2e-87 | LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 8e-62 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A2P5DEA8 | 1e-119 | A0A2P5DEA8_PARAD; Lateral organ boundaries domain containing protein | ||||
STRING | XP_008371805.1 | 8e-87 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-59 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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