PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G006189.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 611aa    MW: 67412.4 Da    PI: 7.2771
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G006189.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.95e-1012446103374
                  GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           + ++e+A a+s+g++e+a+++L+rl ++ ++p+ ++ qR+  ++  AL++r+           +p + +e  s+e++aa++ ++++sP+
  HL.SW.v1.0.G006189.1 244 QSIMEAALAISDGKTEAANEMLTRLFTQvSNPRPTSEQRVLEFLSSALKSRVKP-------EENPAPVKELFSQEHAAATQHLYDLSPC 325
                           7899*********************988466677*******************9.......2344444444499*************** PP

                  GRAS  91 lkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelg 173
                           +++++ +aN aIl+a+ ++     ++vH+iDfdi++G+Q++ Llq+L++R++g+p sl+iT++++ + g++e+l++++e+L+++A++lg
  HL.SW.v1.0.G006189.1 326 FRLGFSVANFAILDATLTDdsavnNKVHVIDFDIGYGGQYADLLQKLSERQNGQPlSLKITTLAD-NGGNQERLKNVEEKLSQLARRLG 413
                           ***************987767787999************************99998*********.556******************** PP

                  GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                           v+f+ nv  ++r+++l+ ++L ++p+E +aVn++++l+r++desvs+e++rd++L+ vk + P+vv+vveqe+++n+++F++r++e++ 
  HL.SW.v1.0.G006189.1 414 VTFKLNV-QSNRISELSRDSLGCEPDEPIAVNFAFKLYRMPDESVSTENHRDNLLRRVKAMAPRVVTVVEQELNTNTAPFMARVSETCA 501
                           ******9.9******************************************************************************** PP

                  GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                           yysal+ds++    r+++er+ vE++ ++r++ n vaceg++r+er+e ++kW +rl++aGF+  pls++a +  ++  +++++   +v
  HL.SW.v1.0.G006189.1 502 YYSALLDSVDPAGTRDNSERVRVEEA-VSRKVGNSVACEGRDRIERCEVFGKWMARLSMAGFELRPLSQSAKARLSSG-NRFHN-NLSV 587
                           *********99999************.9******************************************99888775.55553.59** PP

                  GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                           +ee++ + +gW++r+L+++SaWr
  HL.SW.v1.0.G006189.1 588 KEENQGISFGWMGRTLTVASAWR 610
                           **********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.215216592IPR005202Transcription factor GRAS
PfamPF035141.7E-98244610IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MQSGYTGAGG LPDFYTNGRS TMNNVPSQPP YHRPQLPGLY IDPTASRIAR QNPTALIGKR  60
NLAEFQSHHQ QYNPNLGLVQ QNYLRSVKPR TFQQSSPISP LSPMEFSPTA TTVSESSSCS  120
SSSPASSQRY GLPLPQQHLR PQPIQGMSYV NPVQNRVPVV DSEKKMMNHR LQELEKQLLD  180
DNDEEEGDPV SAITNNSNSE WSETIQNLIS PNQTQKPVSP SPTSSSSSSS SSVASPAILT  240
CSKQSIMEAA LAISDGKTEA ANEMLTRLFT QVSNPRPTSE QRVLEFLSSA LKSRVKPEEN  300
PAPVKELFSQ EHAAATQHLY DLSPCFRLGF SVANFAILDA TLTDDSAVNN KVHVIDFDIG  360
YGGQYADLLQ KLSERQNGQP LSLKITTLAD NGGNQERLKN VEEKLSQLAR RLGVTFKLNV  420
QSNRISELSR DSLGCEPDEP IAVNFAFKLY RMPDESVSTE NHRDNLLRRV KAMAPRVVTV  480
VEQELNTNTA PFMARVSETC AYYSALLDSV DPAGTRDNSE RVRVEEAVSR KVGNSVACEG  540
RDRIERCEVF GKWMARLSMA GFELRPLSQS AKARLSSGNR FHNNLSVKEE NQGISFGWMG  600
RTLTVASAWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-402376107375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021653.10.0scarecrow-like protein 8 isoform X1
RefseqXP_024021654.10.0scarecrow-like protein 8 isoform X2
SwissprotQ9FYR71e-167SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A2P5CAZ60.0A0A2P5CAZ6_PARAD; GRAS transcription factor
STRINGXP_010096860.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-157SCARECROW-like 8