PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G006171.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family AP2
Protein Properties Length: 420aa    MW: 47106.9 Da    PI: 7.1241
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G006171.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.92.2e-1245102156
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                           s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g+
  HL.SW.v1.0.G006171.1  45 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWGH 102
                           57*******************99998898888888********************997 PP
2AP250.93.8e-16144195155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  HL.SW.v1.0.G006171.1 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 195
                           89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-1545111IPR016177DNA-binding domain
PfamPF008471.2E-845102IPR001471AP2/ERF domain
SMARTSM003802.3E-2046115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-1346110IPR001471AP2/ERF domain
PROSITE profilePS5103218.72946109IPR001471AP2/ERF domain
PRINTSPR003675.3E-64758IPR001471AP2/ERF domain
CDDcd000185.10E-24144205No hitNo description
SuperFamilySSF541711.31E-17144205IPR016177DNA-binding domain
PfamPF008477.1E-12144195IPR001471AP2/ERF domain
PROSITE profilePS5103218.334145203IPR001471AP2/ERF domain
SMARTSM003801.2E-24145209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17145204IPR001471AP2/ERF domain
PRINTSPR003675.3E-6185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAKLSQKNNG NNNNNSAATN NGSHVPKVKR TRRSVPRDSP PQRSSIYRGV TRHRWTGRYE  60
AHLWDKNCWN ESQNKKGRQG AYDDEEAAAH AYDLAALKYW GHDTILNFPL STYEKELKDM  120
EGVAREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE  180
EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LKPNTTTSTT TTTTNATTTT YNHNNINGNL  240
ISLPNPININ HEATTTLTHD QNLMISQKQQ DDHHDQLGLS NFFHDVQNIS CSVAGETPIS  300
SGQLQPRSTT ATSALGLLLQ SSKFKEMMEM TTSAGADSCP LLSSSPPSLP VLLPESDDRR  360
DQSLSCAFPD NMQTYYEDHH HQCQDSSSIS FVDGDDSIFS ELNSFMQPMF PCDFNTSTY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027310.11e-180AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2P5FND30.0A0A2P5FND3_TREOI; AP2/ERF transcription factor (Fragment)
STRINGXP_010105409.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.19e-87ARIA-interacting double AP2 domain protein