PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G006089.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ZF-HD
Protein Properties Length: 298aa    MW: 32365.3 Da    PI: 8.5919
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G006089.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.94.4e-3270126259
           ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                           ++v+Y+eClkNhAa++G++a+DGCgEfmps geegt++alkC+AC+CHRnFHR+eve 
  HL.SW.v1.0.G006089.1  70 KGVKYRECLKNHAAAMGANATDGCGEFMPS-GEEGTIEALKCSACNCHRNFHRKEVEG 126
                           679**************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.0E-2872124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2572127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-3073124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.59274123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.09E-19223291IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-31225292IPR009057Homeodomain-like
TIGRFAMsTIGR015653.8E-27230286IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MELSSHQGDI PIPLNSSPYG DGGHGHLIHH DPSPHNHIIP SSAVPQIPSN NGSSIPTSLE  60
DHVPYNNNKK GVKYRECLKN HAAAMGANAT DGCGEFMPSG EEGTIEALKC SACNCHRNFH  120
RKEVEGEPTP YDQFHHNTNS PHLSRMAAGR KFILGPHKGM LGPDSLGYPT ATGTFIPSRT  180
GPMPHHMIMS YNMAGSLPSE SDEQEDVGGN GGGGGGGGGS VAYRPPQLAK KRFRTKFTQE  240
QKDKMLNFAE KVGWKIQKQE ESVVQQFCQE IGVKRRVLKV WMHNNKHNLA KKNPPSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-242312881875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897827.11e-146zinc-finger homeodomain protein 4-like
SwissprotO647222e-70ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A2P5E9G80.0A0A2P5E9G8_TREOI; Octamer-binding transcription factor
STRINGcassava4.1_013112m1e-137(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.18e-70homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]