PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005794.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 225aa    MW: 24133.2 Da    PI: 10.2626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005794.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.5e-114489454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          +h+e+Er RR riN  +++Lr++lP++      K++Ka++L ++++ +++L
  HL.SW.v1.0.G005794.1 44 KHSEAERIRRMRINGQYATLRTILPNL-----IKMDKASVLAETIRRVREL 89
                          59************************9.....6************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.7194089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-114498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.99E-104494No hitNo description
SuperFamilySSF474592.22E-124499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-84489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-94695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MHLVQAGCRN TSRGYSMQNG LDRRLTSITK PKLKADAKPF AAFKHSEAER IRRMRINGQY  60
ATLRTILPNL IKMDKASVLA ETIRRVRELK KAVEEVEAVC CTVVPGGEDG LSLEYSGGVE  120
EDGQDSGAAG LVFIKVALSL EDRPGLMLEL INAVKSVKGA GGVGLIRVVK AEMVTVGGRT  180
KTLLWLQPMP PPASSGSSSG SGDYDGEGVL VMLRRTLRVV LVKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873779.12e-55transcription factor bHLH131-like
TrEMBLA0A2P5AQH25e-79A0A2P5AQH2_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_008235541.18e-53(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.16e-27bHLH family protein