PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005747.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TALE
Protein Properties Length: 633aa    MW: 70941.2 Da    PI: 6.1805
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005747.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.46.6e-104084451954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+++e+  LAk++gLt++qV +WF N R +
  HL.SW.v1.0.G005747.1 408 FEHflHPYPKESEKVVLAKQTGLTTKQVANWFINARVR 445
                           664459******************************88 PP
2BELL97.98.2e-32274345172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           e+q+l++  +kL+s+l+ +d +Ykqy++q+qtv+s  + vag g+a+pYtslA+k+iSrhFrcL+d i++qi
  HL.SW.v1.0.G005747.1 274 EQQDLKNTMTKLMSMLDDIDIKYKQYYNQMQTVVSFLDNVAGRGAAEPYTSLAQKTISRHFRCLRDGISSQI 345
                           6789999****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-38200343IPR006563POX domain
PfamPF075262.9E-40208342IPR006563POX domain
PROSITE profilePS5007112.228386449IPR001356Homeobox domain
CDDcd000861.97E-11389450No hitNo description
SMARTSM003895.6E-9389453IPR001356Homeobox domain
SuperFamilySSF466893.38E-17390456IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27392455IPR009057Homeodomain-like
PfamPF059203.1E-17406445IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MATYVPNQSL KKCDLASTTT AAYEDDHEAF VTCPQPSFNQ ASPTEPFSMS FHGSSNYCVN  60
SSQGRNEMMF IPTIATDPVG SCVNGDDSLV NHQNNVHYQG QGLSLSLGKQ IHEPPVSLTS  120
FHHDNQYHYS SNPSLSSDMG TCLPSNNMGM GLGSNQQNVE SFNFMASGFL GINNNNNSIK  180
TECFGNQIMQ QGERYHDQYD QPSCGFNNFK YLKAVQELLA EVVNVRKALN KHQNHKFQGN  240
GSDGFKESDL KSNGPSADPS ESTANSSCEL SSTEQQDLKN TMTKLMSMLD DIDIKYKQYY  300
NQMQTVVSFL DNVAGRGAAE PYTSLAQKTI SRHFRCLRDG ISSQIQAIQR RLGEQDNGQN  360
SAIPRLRYVD LKLRQQRGLN QLAAMRHAWR PQRGLPETSV SILRAWLFEH FLHPYPKESE  420
KVVLAKQTGL TTKQVANWFI NARVRLWKPM VEEMYKEEFN DLEMNSKEAG GGGGGAAVDS  480
SFEENRREER NPLQTQNRRL RDETNVTDSE TTKSPVHNAG VYLDDDTVRT STTTNTSTNQ  540
NQNQNQASYD DISELSSIVV RNERHVSLAL ELRHCESDGF STLGGSHMRG DDESASQASL  600
DYHCLETEQQ ERRRFSSNPH LLHDFVVCHL KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A5e-17395453563Homeobox protein Meis2
4xrm_B5e-17395453563Homeobox protein Meis2
4xrs_A4e-17395452158Homeobox protein Meis1
4xrs_B4e-17395452158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110017.10.0BEL1-like homeodomain protein 7
TrEMBLA0A2P5EZK20.0A0A2P5EZK2_TREOI; Homeodomain transcription factor
STRINGXP_010110017.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19700.31e-105BEL1-like homeodomain 10