PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G005686.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | GRF | ||||||||
Protein Properties | Length: 622aa MW: 66201 Da PI: 8.3676 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.5 | 2.6e-24 | 239 | 283 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e HL.SW.v1.0.G005686.1 239 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 283 79****************************************985 PP | |||||||
2 | QLQ | 52.5 | 1.5e-18 | 181 | 216 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+ +L++Q+l+yKy+ +n+ vP++Ll++++k HL.SW.v1.0.G005686.1 181 PFTPSQWIELEHQALIYKYITSNVAVPSNLLMPLKK 216 9********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.6E-10 | 180 | 216 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.8E-13 | 181 | 214 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.286 | 181 | 216 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.287 | 239 | 283 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.0E-21 | 240 | 282 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence Send to blast |
MDFGLVSLES LVGPPHHERG GGNGGGGGGG GGGGGGGGGV SSQFNDSETK SINNGVLGSG 60 FVKQERSGPC DDDWKSSKVA KTVDLSSSKT MPLHQGTPML RSNSLGFHAD TRQQEHMLSF 120 SSNKSQVSFL SKDAALMERT SQNSAFPYYQ RPPTSYSRNT GYGSGSLNAS MHATFTGIRA 180 PFTPSQWIEL EHQALIYKYI TSNVAVPSNL LMPLKKSLNP YGLAVGWGSF HLGFADNTDP 240 EPGRCRRTDG KKWRCSRDAV ADQKYCERHI NRGRHRSRKP VEGQTGQAAS GTTNSKAAQM 300 TTSVSTSAMP GGGGGGSASN NLAITQHQFK GLQSGAAATN PSTDTLVNRM QDLRGAQSVM 360 SSSNVNTKSN QSTFNVLKQE IPPGASSQSE FGLVSTDSLL NPSQENAYIN SKNYASFLDF 420 SGQEAQDQHH PLRHFIDDWP KDQSNRSVIT WPEEIKSDWT QLSMSIPVTS SEFSSSTNSP 480 TRQEKMALSP LRLSREFEPM QMNLGVNNDL SEATHKLTNW VPKSWGSSMG GPLGEVLTNT 540 AGSVQACKNP SSLNLLTEGW DGSPQLGSSP TGVLQKSTFC SLSNSSSGSS PRADNKRNID 600 GASVFDDVLG STLASSSVPS L* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM488616 | 1e-46 | AM488616.1 Vitis vinifera contig VV78X030262.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890409.1 | 0.0 | growth-regulating factor 1 isoform X2 | ||||
Swissprot | O81001 | 1e-124 | GRF1_ARATH; Growth-regulating factor 1 | ||||
TrEMBL | A0A2P5FSC7 | 0.0 | A0A2P5FSC7_TREOI; Growth-regulating factor | ||||
STRING | XP_010106901.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2085 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 1e-120 | growth-regulating factor 1 |
Publications ? help Back to Top | |||
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