PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005483.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 359aa    MW: 40061.3 Da    PI: 10.367
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005483.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.6e-31292349359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ed +++++tYegeHnh+
  HL.SW.v1.0.G005483.1 292 DDFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDSSMLIVTYEGEHNHP 349
                           99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819957.32E-6131202No hitNo description
PfamPF105336.5E-18242288IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.3E-33278350IPR003657WRKY domain
PROSITE profilePS5081129.907285351IPR003657WRKY domain
SuperFamilySSF1182907.19E-27288350IPR003657WRKY domain
SMARTSM007741.8E-38290350IPR003657WRKY domain
PfamPF031066.7E-27292349IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEEVEEANKA AVESCHRVLN LLSQPQDQVQ RRNLVVETGE AVVRFKRVVS LLNTGLGHAR  60
VRKVKKLPIP LPQNILLDNP NCRTDRPSKT SHFLQSSIPE NPLHDMGSNV KSSLCLGNTS  120
LELSSGGKTP IQLAQQGTPA HYRLLQQQQQ QHQQQQQQQQ QQQKLLFQQH QQQMKHQAEM  180
MFRKSNSGIS LNFDSSSCTP TMSSTRSFIS SLSMDGSVAN LDGNSFHLIG APRSSDQTSQ  240
HKRKCSARGD DGSVKCGSSG GRCHCSKKRK HRVKRSIKVP AISNKLADIP PDDFSWRKYG  300
QKPIKGSPHP RGYYKCSSMR GCPARKHVER CLEDSSMLIV TYEGEHNHPR IQSQSANN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-212863481071WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891502.10.0probable WRKY transcription factor 21
RefseqXP_015891503.10.0probable WRKY transcription factor 21
SwissprotO043361e-127WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A2P5AN690.0A0A2P5AN69_PARAD; WRKY domain containing protein
STRINGXP_008235315.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-119WRKY DNA-binding protein 21