PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G005365.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 33915.4 Da PI: 6.1721 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.4 | 9.7e-52 | 9 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv++yL++k+++ ++ + +ike+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg d HL.SW.v1.0.G005365.1 9 LPPGFRFHPTDEELVNHYLCRKCSSLPIAV-PIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGAD 96 79*************************999.88***************7666789********************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ + + g+kk Lvfy g+apkg+kt+W+mheyrl HL.SW.v1.0.G005365.1 97 KPIGK--PKPLGIKKALVFYAGKAPKGVKTNWIMHEYRL 133 ***98..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-62 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.179 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-27 | 10 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MTSTGELILP PGFRFHPTDE ELVNHYLCRK CSSLPIAVPI IKEIDLYKFD PWQLPEMALY 60 GEKEWYFFSP RDRKYPNGSR PNRAAGTGYW KATGADKPIG KPKPLGIKKA LVFYAGKAPK 120 GVKTNWIMHE YRLANVDRSA GKKNNSRLDD WVLCRIYNKK GSIEKNYPTN QVMKMEEFPE 180 IEDTKPQIIP SAFHNDHLYM DTSDSVPKLH TDSSCSEHVL SPEVTCDREV QSEPKWNNIS 240 DDVLDNAFDF NFNFMDGFSD DPFGSQLQIQ YPNPMDQLSP FQDMFSFNFV QKPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-80 | 3 | 165 | 9 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023924037.1 | 1e-161 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-128 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2P5CL93 | 0.0 | A0A2P5CL93_PARAD; NAC domain containing protein | ||||
STRING | EOX92686 | 1e-155 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-110 | NAC family protein |