PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005332.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 309aa    MW: 36132.3 Da    PI: 10.5249
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005332.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.4e-1859113256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +kR+t++k+qle Le+ F++  ++  +++ +L++ lgL+ rq+ vW+qN+Ra+ k
  HL.SW.v1.0.G005332.1  59 KKRRTLSKSQLESLERSFQEGVKLEPDKKMKLSRDLGLEPRQIAVWYQNKRARLK 113
                           89***************************************************98 PP
2Homeobox55.11.3e-17141195256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k++t++k+qle Le+ F++  ++  +++ +LA+ lgL+ rq+ vW+qN+Ra+ k
  HL.SW.v1.0.G005332.1 141 EKKRTLSKSQLESLEKSFQEGVKLEPDKKMKLARDLGLEPRQIAVWYQNKRARLK 195
                           67889************************************************98 PP
3HD-ZIP_I/II1025.3e-3359143185
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                           +k+r lsk q+++LE+sF+e  kLep++K++l+r+Lgl+prq+avW+qn+RAR ktkq+E+ yeaLk+++d++++e+++L+ke++
  HL.SW.v1.0.G005332.1  59 KKRRTLSKSQLESLERSFQEGVKLEPDKKMKLSRDLGLEPRQIAVWYQNKRARLKTKQIERSYEALKHEFDRMSREKQKLQKEKK 143
                           46677*****************************************************************************987 PP
4HD-ZIP_I/II110.41.2e-35141232192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkr lsk q+++LE+sF+e  kLep++K++lar+Lgl+prq+avW+qn+RAR ktkq+E+ yeaLk+ +d++++e+++L+kev +L+ 
  HL.SW.v1.0.G005332.1 141 EKKRTLSKSQLESLEKSFQEGVKLEPDKKMKLARDLGLEPRQIAVWYQNKRARLKTKQIERSYEALKHDFDRMSKEKQKLQKEVVKLKC 229
                           69*************************************************************************************99 PP

           HD-ZIP_I/II  90 elk 92 
                           +l+
  HL.SW.v1.0.G005332.1 230 KLR 232
                           887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.44E-1649117IPR009057Homeodomain-like
PROSITE profilePS5007116.09955115IPR001356Homeobox domain
SMARTSM003892.1E-1557119IPR001356Homeobox domain
CDDcd000861.73E-1159116No hitNo description
PfamPF000462.0E-1559113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-1759122IPR009057Homeodomain-like
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
SuperFamilySSF466895.99E-16132199IPR009057Homeodomain-like
PROSITE profilePS5007116.601137197IPR001356Homeobox domain
SMARTSM003894.8E-16140201IPR001356Homeobox domain
PfamPF000466.3E-15141195IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-17143204IPR009057Homeodomain-like
CDDcd000863.03E-10144198No hitNo description
PROSITE patternPS000270172195IPR017970Homeobox, conserved site
PfamPF021839.2E-9197231IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDWNMGNARR GVSRTGSSYG FPFHKDYDSH YQGMNRKPHQ LAILSETAQR LNVGPCMEKK  60
RRTLSKSQLE SLERSFQEGV KLEPDKKMKL SRDLGLEPRQ IAVWYQNKRA RLKTKQIERS  120
YEALKHEFDR MSREKQKLQK EKKRTLSKSQ LESLEKSFQE GVKLEPDKKM KLARDLGLEP  180
RQIAVWYQNK RARLKTKQIE RSYEALKHDF DRMSKEKQKL QKEVVKLKCK LRDQNASGSK  240
QVPMSGNSSM ISREDKAETT ADAISGSSNM SQGTNKHHHH IMAYHQCNHI FNKEEYNPIS  300
PPYWGFFP*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103343.11e-59putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR02e-30ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2P5C5325e-59A0A2P5C532_PARAD; Octamer-binding transcription factor
STRINGXP_010103343.15e-59(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-25homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]