PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005288.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 750aa    MW: 84135.9 Da    PI: 5.6909
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005288.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.72.5e-1213757451373
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lL+ cA+ v+++d + a+++L+++++++s+ gd mqR+a+yf+ +L+ar+a+s++++ykal +++ts    +++l+a++lf  ++P
  HL.SW.v1.0.G005288.1 375 LRTLLTLCAQSVAADDRRSAEEFLKQIRHHSSSIGDGMQRMAHYFADGLEARMAGSGTQIYKALITKPTS---AADVLKAYHLFLAACP 460
                           5789****************************************************************99...9*************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           + k+s++  N++I++ +++++r+HiiDf+i +G+QWp+L+q L+sR++gpp+lRiTg++ p++g   +e++eetg rL+++A++++vpf
  HL.SW.v1.0.G005288.1 461 FKKLSNFFSNKTIMNLAAKATRLHIIDFGILYGFQWPCLIQRLSSRAGGPPKLRITGIDFPQPGfrPAERVEETGCRLENYAKTFNVPF 549
                           ***************************************************************9************************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           efn+ +a++++++++e+L+++++E+l+Vn++++  +llde+v ++s+rd vL+l+++++P+v+++   +  ++++ F +rf eal+++s
  HL.SW.v1.0.G005288.1 550 EFNA-IAQKWDTIRIEDLKLDKDEVLVVNCMHRFRNLLDETVLVDSPRDIVLNLIRKMNPDVFILGTVNGAYTAPFFITRFREALYHFS 637
                           ****.7*********************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           +lfd+le+++pre+ er+ +Ere++gre++nv+acegaer+er et+++W+ r+ +aGF+++pl+++++++ak  ++ ++ + + ++++
  HL.SW.v1.0.G005288.1 638 TLFDMLETNVPRETPERMLIEREIFGREAMNVIACEGAERIERPETYKQWHVRMLRAGFRQLPLNQEIMQTAKDRVNSYYHKDFVIDKD 726
                           ********************************************************************************888****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaW 373
                            ++++ gWk+r  +++S+W
  HL.SW.v1.0.G005288.1 727 GQWMLKGWKGRIAYALSSW 745
                           ******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.75349726IPR005202Transcription factor GRAS
PfamPF035148.7E-119375745IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MDQSLSAFYC GSNNGLDLND DCLSNLSHEN NGNSGFGTNG KFVDQNHSTV LLSPDPTLSN  60
LVQSSCVNQE EDCAHEDFDF SDVVLKYISQ MLMEEDMEEK TCMFQESAAL QAAEQSLYEL  120
IRDKHPSAID GPITYCDLNH ASPDGSHALQ GISSCSCSTS TITNTNFLDP GCRSDLWEYK  180
SAQDVSQSTS QSSYTSSNGT SKIVDALADS PVSTLKVPEM FTEMDSVMQF KRGFEEASKF  240
LPIDNSFNVD LESNNLFSKE FKESKDGAVK VEKKYQIEYS LDGSRGKKNP LSDDVSVEAG  300
RSNKQSAVCS ESNVSPEMFD MILLNCGRND AATLRESLQN ETSKNLQQNG QSKGMNSGGK  360
ARGKKQGRKR DVVDLRTLLT LCAQSVAADD RRSAEEFLKQ IRHHSSSIGD GMQRMAHYFA  420
DGLEARMAGS GTQIYKALIT KPTSAADVLK AYHLFLAACP FKKLSNFFSN KTIMNLAAKA  480
TRLHIIDFGI LYGFQWPCLI QRLSSRAGGP PKLRITGIDF PQPGFRPAER VEETGCRLEN  540
YAKTFNVPFE FNAIAQKWDT IRIEDLKLDK DEVLVVNCMH RFRNLLDETV LVDSPRDIVL  600
NLIRKMNPDV FILGTVNGAY TAPFFITRFR EALYHFSTLF DMLETNVPRE TPERMLIERE  660
IFGREAMNVI ACEGAERIER PETYKQWHVR MLRAGFRQLP LNQEIMQTAK DRVNSYYHKD  720
FVIDKDGQWM LKGWKGRIAY ALSSWSPVC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-503757455374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021541.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A2P5CIW20.0A0A2P5CIW2_TREOI; GRAS transcription factor
STRINGXP_010096585.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14