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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G005278.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
GRAS |
| Protein Properties |
Length: 452aa MW: 51686.4 Da PI: 6.5709 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G005278.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 335.8 | 8e-103 | 61 | 450 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaal.. 81
+++l+++cAe +s++dl a++l++ ls ++sp+gd+++Rl + +++AL +rl+ ++++ ++ + +e+++++ + +
HL.SW.v1.0.G005278.1 61 MRQLVIRCAELISQSDLGGAHRLVSVLSANSSPYGDSVERLLHQLARALFRRLHLMQHHRMSLHNNEEDQDHHhhhhhhH------Rnn 143
5899**************************************************98888777666666665553344330......344 PP
GRAS 82 ......kl....fsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeel 158
+ +++++P+++f+hltaNqaIle +++ +++Hi+Dfdi++GlQWp+++qaL +R ++ +lRiT+ g + l
HL.SW.v1.0.G005278.1 144 qdlqalQScyitLNQITPFIRFCHLTANQAILEVIDEThhQALHILDFDIMHGLQWPPFMQALVER-HPMLRLRITATGT----DLSLL 227
455544224456***********************99878999**********************9.6788*********....9**** PP
GRAS 159 eetgerLakfAeelgvpfefnvl....vakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsles...erdevLklvkslsP 236
++tg+rL +fA++lg++f+f++l +a++ + l +++++ ++ +EalaVn+vl lhrll+++ +++ ++ +L+ +k l+P
HL.SW.v1.0.G005278.1 228 RRTGDRLLRFAQSLGLHFQFHPLllpsTADHPHHLLINTINNSSviniDEALAVNCVLYLHRLLKDDNQVAVdsdSIHLFLRSIKALNP 316
**********************96666555556666666654447779****************988776553357889********** PP
GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer...hetlekWrerleea 322
+vv+++e+ea+h +++al++y+a+fdslea+lp++s+er vE+++lgrei+++va+ +++r +++e+W+ +l+++
HL.SW.v1.0.G005278.1 317 TVVTIAEREANH-------TLADALDHYTAIFDSLEATLPPNSRERLAVEQVWLGREIMDLVAAHEEQRMTIrrgSQRYESWEVMLRSS 398
************.......899******************************************9999865411257899********* PP
GRAS 323 GFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
GF++vpls +a +qaklllr ++ s+gy+++ ++s++lgW++rpL++vS+W
HL.SW.v1.0.G005278.1 399 GFSNVPLSPFALSQAKLLLRLHYpSEGYQLHILNDSFFLGWQNRPLFWVSSW 450
**************************************************** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 452 aa
Download sequence Send
to blast |
MLMGSFNSSH HEQPRGDEEE EEEEEQDTAA AASPDLLQTT SSHSHLAFPA PASQPINAIH 60
MRQLVIRCAE LISQSDLGGA HRLVSVLSAN SSPYGDSVER LLHQLARALF RRLHLMQHHR 120
MSLHNNEEDQ DHHHHHHHHH RNNQDLQALQ SCYITLNQIT PFIRFCHLTA NQAILEVIDE 180
THHQALHILD FDIMHGLQWP PFMQALVERH PMLRLRITAT GTDLSLLRRT GDRLLRFAQS 240
LGLHFQFHPL LLPSTADHPH HLLINTINNS SVINIDEALA VNCVLYLHRL LKDDNQVAVD 300
SDSIHLFLRS IKALNPTVVT IAEREANHTL ADALDHYTAI FDSLEATLPP NSRERLAVEQ 360
VWLGREIMDL VAAHEEQRMT IRRGSQRYES WEVMLRSSGF SNVPLSPFAL SQAKLLLRLH 420
YPSEGYQLHI LNDSFFLGWQ NRPLFWVSSW H*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
