PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005122.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 569aa    MW: 62264.3 Da    PI: 9.1395
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005122.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000166282323
                          ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                          C++C+k F r  nL+ H r H
  HL.SW.v1.0.G005122.1 62 CEICNKGFQRDQNLQLHRRGH 82
                          *******************88 PP
2zf-C2H212.80.00035137159123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC++C+k +  +s+ k H + +
  HL.SW.v1.0.G005122.1 137 WKCEKCSKKYAVQSDWKAHTKIC 159
                           58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.73E-75982No hitNo description
Gene3DG3DSA:3.30.160.602.7E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8246082IPR007087Zinc finger, C2H2
SMARTSM003550.116082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM0035593102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.73E-7132157No hitNo description
SMARTSM00355130137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
LIPAPPSVEG LLKNQIQTLT LTLIQIPQPR RKEIYQEIQA NPDAEVIALS PKSLMATNRF  60
LCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSNKDVIRKK VYVCPEKTCV HHDPSRALGD  120
LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHTKICG TREYKCDCGT LFSRKDSFIT  180
HRAFCDALAE ENARFGTTAI PTTNILPNFI NNNINNPQTI AAAGRMAHPQ LSPIFPPEFG  240
SESMNSFGTN SSAAGEIRSR LPVWLDPANS HHQLSSNNNT PFMTTATAGN SPGGFSEVLL  300
QTAATSANMF GQQPPHHQWL NKFSAHDHHH AATTFPAMSS LPRGLKEEEE SKGNNNNSTT  360
TTTTTNNNIS LSESMTSSSL LPNNQNLQLQ GPAHMSATAL LQKAAQMGST RSNPTSFNGS  420
AFGLMSSLSS SSSHKQVLFR QPVNHQSTAE NNFNDLVNSL QASSDNNNNN TNISDSNNNN  480
GPAVLSSPSS FKSLDQFSLK QVPAQPSSAT TTTTITNEND EHSLTRDFLG VGGDGHIHGS  540
GSNFFQQELA KFASMGSAMN LSQYNGHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35133197367Zinc finger protein JACKDAW
5b3h_F2e-35133197367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18699KLRQRSNKDVIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026361.10.0protein indeterminate-domain 9
TrEMBLA0A2P5E4D00.0A0A2P5E4D0_TREOI; TFIIH C1-like domain containing protein
STRINGXP_010104109.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.12e-94C2H2 family protein