PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G004991.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bZIP
Protein Properties Length: 417aa    MW: 45188.1 Da    PI: 7.2967
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G004991.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.52.2e-21272334163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           ++elkrerrkq+NRe+ArrsR+RK+ae+e L++kv++L++eN aLk el++l+++++kl+ e+
  HL.SW.v1.0.G004991.1 272 DRELKRERRKQSNRESARRSRLRKQAETEDLARKVESLTSENVALKVELNRLTENSEKLRLEN 334
                           689********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.8E-331100IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165969.0E-19132254No hitNo description
Gene3DG3DSA:1.20.5.1707.7E-17265331No hitNo description
SMARTSM003389.4E-19272336IPR004827Basic-leucine zipper domain
PfamPF001701.9E-19273334IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.07274337IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-10275331No hitNo description
CDDcd147023.59E-21277325No hitNo description
PROSITE patternPS000360279294IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGNDEDGKSA KSEKTSPPAT PDQTTPTNQT NIHVYPDWAA MQAYYGPRVA LPPYYNSAVA  60
SGHAPHPYLW GPPQPIMPPF GTPYAAIYSH GNVYPHHGVP LGTHGQGVPS SPTLGVTPMS  120
VEMPTKSSGN SEREFEKKMK GFDSLSMSIG NGNVESRADL MPSQSTETEG SSDGSDGNTS  180
GANQIRRKRS REETPTTGDE KSEKRVNSVS DKTIGASLSA AGVSTKLVEP IVSPGMTTAF  240
ELGNPTNLSP KTSPGFNQTC TVLPSDSWVQ NDRELKRERR KQSNRESARR SRLRKQAETE  300
DLARKVESLT SENVALKVEL NRLTENSEKL RLENTKLVGK LEIAQLGRTE EIVMNKVDKR  360
TQPISTENLL SRVNNSGSID RTAEEDNGMY EKNSNPGTKL HQLLDASPRA DAVVAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288294RRSRLRK
2288295RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019007.10.0common plant regulatory factor 1
RefseqXP_024019008.10.0common plant regulatory factor 1
RefseqXP_024019009.10.0common plant regulatory factor 1
SwissprotQ990891e-137CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A2P5E8F90.0A0A2P5E8F9_TREOI; Basic-leucine zipper transcription factor
STRINGXP_010092905.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-102G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]