PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G004777.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | ARF | ||||||||
Protein Properties | Length: 709aa MW: 77735.6 Da PI: 7.9357 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.3 | 1.2e-22 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g+ W++++i+r++++r++lt+GW++Fv++++L +gD++vF HL.SW.v1.0.G004777.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfpgldysADPPVQ--TVIAKDVHGEMWKFRHIFRGTPRRHLLTTGWSNFVNQKKLVAGDSIVF 198 89****************************996555545..8*********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 +++++ +v+++r+ HL.SW.v1.0.G004777.1 199 L--RTKTGDICVGIRRA 213 *..4588889****996 PP | |||||||
2 | Auxin_resp | 113 | 2.9e-37 | 274 | 357 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa++a+++++Fe++Y+Pr+st+eF+vk+++v++a+++++s GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+ HL.SW.v1.0.G004777.1 274 AATRAANGEPFEIIYYPRVSTPEFCVKASSVKAAMRIQWSSGMRFKMAFETEDSSRISWfMGTIASVKVADPIRWPHSPWRLLQ 357 78999*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.7E-37 | 103 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-28 | 108 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.39E-20 | 111 | 212 | No hit | No description |
SMART | SM01019 | 5.2E-21 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-21 | 112 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.943 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.1E-32 | 274 | 357 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.616 | 596 | 676 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MKDVEKSLDP QLWQACAGGM VNIPPVHSKV FYFPQGHAEH AQAHVDFAAA SLRIPAFVLC 60 RVSAVKFMAD PESDEVFAKI RLAPLGMSEL RSEDDEVVGS DGSENPEKPT SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPG LDYSADPPVQ TVIAKDVHGE MWKFRHIFRG TPRRHLLTTG 180 WSNFVNQKKL VAGDSIVFLR TKTGDICVGI RRAKRSIGGS DTTSGWNNGS SYGGFSVFMR 240 EDENKMARNG CGNSGPGGNF RGTRRVRPEA VIEAATRAAN GEPFEIIYYP RVSTPEFCVK 300 ASSVKAAMRI QWSSGMRFKM AFETEDSSRI SWFMGTIASV KVADPIRWPH SPWRLLQVTW 360 DEPDLLQNVK CVSPWLIESV ANMPIIHMSS FSPPRKKLRF PQHPDFTFDG HFPVSSFLGN 420 PLGPSSPMCC LPDNTPAGIQ GARHALFGLS LSDLQLNNKL QPGLLSSSFQ QLNQHSGISS 480 GLKRGRSDSN ESLSCLLTMG NSSPSAEKSD SVKRHQFVLF GQRILTEQQI SQVSSSDPVS 540 QESVGNISAD GNSDKAKFLS NDSGSTLQQH VSSEKSSSIG FSWHQGRQAT EFGTDTGHCK 600 VFMESEDVGR TLDLSVLGSY EELYRKLANM FEIERSEMPT RVFYHDATGA LKQTGDEPFS 660 DFMKTAKRLT IIADSSSKNM GRTWITGMRN TENGLGASNK TGPLSIFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-76 | 8 | 379 | 51 | 389 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024017098.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A2P5FTY2 | 0.0 | A0A2P5FTY2_TREOI; Auxin response factor | ||||
STRING | XP_010089974.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Publications ? help Back to Top | |||
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